BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF004186.1|BF004186 EST432684 KV1 Medicago truncatula cD... 76 4e-012
gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula c... 76 4e-012
gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula c... 68 1e-009
gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Me... 66 4e-009
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 62 7e-008
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 62 7e-008
gb|AC170583.6| Medicago truncatula clone mth2-19b5, complet... 52 6e-005
gb|BQ147161.1|BQ147161 NF034H03FL1F1031 Developing flower M... 48 0.001
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 46 0.004
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 46 0.004
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 42 0.063
emb|CR349803.1| mte1-84D13FM1 BAC end, cultivar Jemalong A1... 40 0.25
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 40 0.25
gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula c... 40 0.25
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.25
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 40 0.25
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 40 0.25
>gb|BF004186.1|BF004186 EST432684 KV1 Medicago truncatula cDNA clone pKV1-14L2, mRNA
sequence
Length = 364
Score = 75.8 bits (38), Expect = 4e-012
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 525 gaacagaactggagctgcattgtaataaaactaaaaacagccttcatcagccccagctnn 584
||||| ||||| || |||||||| || ||||| ||||||||||||| || || | ||
Sbjct: 324 gaacacaactgaagttgcattgtgatgaaactgaaaacagccttcagcaatcctaactca 265
Query: 585 agaatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattga 644
|| || |||||||||||||| || |||| || |||| |||||||| |||||||||
Sbjct: 264 agtataaaacccattatcattggtactgcagtaaaaacaccaatctgcaccaaaaattgt 205
Query: 645 gcattcaaagctgcatc 661
|||||||| ||||||||
Sbjct: 204 gcattcaaggctgcatc 188
>gb|CF068458.1|CF068458 EST669179 MTUS Medicago truncatula cDNA clone MTUS-8C4, mRNA
sequence
Length = 714
Score = 75.8 bits (38), Expect = 4e-012
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 525 gaacagaactggagctgcattgtaataaaactaaaaacagccttcatcagccccagctnn 584
||||| ||||| || |||||||| || ||||| ||||||||||||| || || | ||
Sbjct: 624 gaacacaactgaagttgcattgtgatgaaactgaaaacagccttcagcaatcctaactca 565
Query: 585 agaatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattga 644
|| || |||||||||||||| || |||| || |||| |||||||| |||||||||
Sbjct: 564 agtataaaacccattatcattggtactgcagtaaaaacaccaatctgcaccaaaaattgt 505
Query: 645 gcattcaaagctgcatc 661
|||||||| ||||||||
Sbjct: 504 gcattcaaggctgcatc 488
>gb|AW559770.1|AW559770 EST314818 DSIR Medicago truncatula cDNA clone pDSIR-24N15, mRNA
sequence
Length = 653
Score = 67.9 bits (34), Expect = 1e-009
Identities = 109/137 (79%)
Strand = Plus / Minus
Query: 525 gaacagaactggagctgcattgtaataaaactaaaaacagccttcatcagccccagctnn 584
||||| ||||| || |||||||| || ||||| |||||||| |||| || || | ||
Sbjct: 600 gaacacaactgaagttgcattgtgatgaaactgaaaacagctttcagcaatcctaactca 541
Query: 585 agaatgaaacccattatcatcgggactgnngtnaaaataccaatctnnnncaaaaattga 644
|| || |||||||||||||| || |||| || |||| |||||||| |||||||||
Sbjct: 540 agtataaaacccattatcattggtactgcagtaaaaacaccaatctgcaccaaaaattgt 481
Query: 645 gcattcaaagctgcatc 661
|||||||| ||||||||
Sbjct: 480 gcattcaaggctgcatc 464
>gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Medicago truncatula cDNA clone
NF053H03IN 5', mRNA sequence
Length = 646
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 364 ctttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
|||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct: 117 ctttaacaaaatgactccgagaatagagcctataattatcagcaaactt 69
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 366 ttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct: 8453 ttgacaaagtgacttcgcgaataaagtctataattatcagcaaactt 8407
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 111 tcccaccaagattcccaact 130
||||||||||||||||||||
Sbjct: 8708 tcccaccaagattcccaact 8689
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 366 ttgacaaagtgacttcgagaatagagcctataattttcagcaaactt 412
||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct: 79850 ttgacaaagtgacttcgcgaataaagtctataattatcagcaaactt 79804
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 111 tcccaccaagattcccaact 130
||||||||||||||||||||
Sbjct: 80105 tcccaccaagattcccaact 80086
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
Length = 113632
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 111 tcccaccaagattcccaactgttgtcaccctttacaccaactccacctttataaagtaac 170
|||||||||| |||||| || | || ||||| ||||||| ||||||| | ||||||| |
Sbjct: 10292 tcccaccaagcttcccagctttcttctcccttaacaccaattccacctctgtaaagtagc 10233
Query: 171 cagtttgtccagtc 184
|| |||||||||||
Sbjct: 10232 caatttgtccagtc 10219
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 454 ttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaagg 513
|||||||||||||||| ||||||| ||||| ||||| || ||||| || | ||||| |
Sbjct: 8284 ttgcaccgccatgaagaattgttcgtccaaaataatgggttcttgtacccaaagaaaaag 8225
Query: 514 tgaaaaa 520
|||||||
Sbjct: 8224 tgaaaaa 8218
>gb|BQ147161.1|BQ147161 NF034H03FL1F1031 Developing flower Medicago truncatula cDNA clone
NF034H03FL 5', mRNA sequence
Length = 266
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 366 ttgacaaagtgacttcgagaatagagcctataattttcag 405
||||||||||||||||| ||||| || |||||||| ||||
Sbjct: 67 ttgacaaagtgacttcgcgaataaagtctataattatcag 28
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtacaca 23
|||||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtacaca 27
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 454 ttgcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaagg 513
|||||||||||||||| ||||||| ||||| ||||| || ||||| || | ||||| |
Sbjct: 1996 ttgcaccgccatgaagaattgttcgtccaaaataatgggttcttgtacccaaagaaaaag 2055
Query: 514 tgaaaaa 520
|||||||
Sbjct: 2056 tgaaaaa 2062
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 138 ccctttacaccaactccacctttataaagtaaccagtttgtccagtc 184
||||| ||||||| ||||||| | ||||||| ||| |||||||||||
Sbjct: 15 cccttaacaccaattccacctctgtaaagtagccaatttgtccagtc 61
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 195 tcaacagtcttttgccactcgaaaccagaagggttgaa 232
|||||| ||||||||||||| || |||||||| |||||
Sbjct: 61438 tcaacaatcttttgccactcaaacccagaaggattgaa 61475
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 42.1 bits (21), Expect = 0.063
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 95 atgcgcctgctcctcatcccaccaagattccca 127
|||| |||| |||||||||||||| ||||||||
Sbjct: 55494 atgctcctgttcctcatcccaccatgattccca 55526
>emb|CR349803.1| mte1-84D13FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 507
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 537 agctgcattgtaataaaact 556
||||||||||||||||||||
Sbjct: 144 agctgcattgtaataaaact 125
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 223 gcggccgcccgggcaggtac 204
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 319 gcggccgcccgggcaggtac 300
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtac 45
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggtac 290
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 320 gcggccgcccgggcaggtac 339
>gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula cDNA clone mtgmacc120010c08,
mRNA sequence
Length = 463
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtaca 21
||||||||||||||||||||
Sbjct: 463 cggccgcccgggcaggtaca 444
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 278 gcggccgcccgggcaggtac 297
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 tcatcccaccaagattccca 127
||||||||||||||||||||
Sbjct: 96833 tcatcccaccaagattccca 96852
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 108 tcatcccaccaagattccca 127
||||||||||||||||||||
Sbjct: 77001 tcatcccaccaagattccca 76982
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 173,315
Number of Sequences: 392609
Number of extensions: 173315
Number of successful extensions: 13407
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13347
Number of HSP's gapped (non-prelim): 58
length of query: 709
length of database: 441,732,993
effective HSP length: 19
effective length of query: 690
effective length of database: 434,273,422
effective search space: 299648661180
effective search space used: 299648661180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)