BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE37h07.yg.2.1
(642 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Me... 50 2e-004
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 46 0.004
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 46 0.004
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 44 0.014
gb|AC158209.13| Medicago truncatula clone mth2-154h5, compl... 42 0.057
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 40 0.22
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 40 0.22
>gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Medicago truncatula cDNA clone
NF053H03IN 5', mRNA sequence
Length = 646
Score = 50.1 bits (25), Expect = 2e-004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 344 ctttgacaaagtgacttnnagaatagagcctataattttcagcaaac 390
|||| ||||| ||||| |||||||||||||||||| |||||||||
Sbjct: 117 ctttaacaaaatgactccgagaatagagcctataattatcagcaaac 71
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 46.1 bits (23), Expect = 0.004
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 346 ttgacaaagtgacttnnagaatagagcctataattttcagcaaac 390
||||||||||||||| ||||| || |||||||| |||||||||
Sbjct: 8453 ttgacaaagtgacttcgcgaataaagtctataattatcagcaaac 8409
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 8708 tcccaccaagattcccaact 8689
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 46.1 bits (23), Expect = 0.004
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 346 ttgacaaagtgacttnnagaatagagcctataattttcagcaaac 390
||||||||||||||| ||||| || |||||||| |||||||||
Sbjct: 79850 ttgacaaagtgacttcgcgaataaagtctataattatcagcaaac 79806
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 80105 tcccaccaagattcccaact 80086
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 175 tcaacagtcttttgccactcgaaaccagaagggttgaa 212
|||||| ||||||||||||| || |||||||| |||||
Sbjct: 61438 tcaacaatcttttgccactcaaacccagaaggattgaa 61475
>gb|AC158209.13| Medicago truncatula clone mth2-154h5, complete sequence
Length = 93864
Score = 42.1 bits (21), Expect = 0.057
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 75 atgcgcctgctcctcatcccaccaagattccca 107
|||| |||| |||||||||||||| ||||||||
Sbjct: 55494 atgctcctgttcctcatcccaccatgattccca 55526
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 tcatcccaccaagattccca 107
||||||||||||||||||||
Sbjct: 96833 tcatcccaccaagattccca 96852
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 88 tcatcccaccaagattccca 107
||||||||||||||||||||
Sbjct: 77001 tcatcccaccaagattccca 76982
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,312
Number of Sequences: 392609
Number of extensions: 89312
Number of successful extensions: 5792
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5770
Number of HSP's gapped (non-prelim): 22
length of query: 642
length of database: 441,732,993
effective HSP length: 19
effective length of query: 623
effective length of database: 434,273,422
effective search space: 270552341906
effective search space used: 270552341906
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)