BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF332176.2.1
(912 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC144645.17| Medicago truncatula clone mth2-11e15, compl... 40 0.32
gb|AC166707.9| Medicago truncatula strain cultivar Jemalong... 40 0.32
>gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete sequence
Length = 124394
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 822 acctagctagctagctagct 841
||||||||||||||||||||
Sbjct: 28042 acctagctagctagctagct 28061
>gb|AC166707.9| Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17,
WORKING DRAFT SEQUENCE
Length = 123664
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 824 ctagctagctagctagctgc 843
||||||||||||||||||||
Sbjct: 40288 ctagctagctagctagctgc 40307
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,256
Number of Sequences: 392609
Number of extensions: 121256
Number of successful extensions: 10566
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10550
Number of HSP's gapped (non-prelim): 12
length of query: 912
length of database: 441,732,993
effective HSP length: 20
effective length of query: 892
effective length of database: 433,880,813
effective search space: 387021685196
effective search space used: 387021685196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)