BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AF019146.2.1
         (1761 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR349284.1|  mte1-83F4FM1 BAC end, cultivar Jemalong A17...    42   0.16 
gb|AC140545.26|  Medicago truncatula clone mth2-11g18, compl...    42   0.16 

>emb|CR349284.1| mte1-83F4FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 713

 Score = 42.1 bits (21), Expect = 0.16
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 620 tgggcgttctcggcggtggcagcggtggaagggatcaacaagatc 664
           ||||| ||||| || |||||||| || ||||| ||||||||||||
Sbjct: 481 tgggcattctcagcagtggcagctgtagaaggcatcaacaagatc 437



>gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete sequence
          Length = 129414

 Score = 42.1 bits (21), Expect = 0.16
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 620   tgggcgttctcggcggtggcagcggtggaagggatcaacaagatc 664
             ||||| ||||| || |||||||| || ||||| ||||||||||||
Sbjct: 92681 tgggcattctcagcagtggcagctgtagaaggcatcaacaagatc 92637



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 191,206
Number of Sequences: 392609
Number of extensions: 191206
Number of successful extensions: 12174
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12164
Number of HSP's gapped (non-prelim): 10
length of query: 1761
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1741
effective length of database: 433,880,813
effective search space: 755386495433
effective search space used: 755386495433
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)