BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG449666.1|BG449666 NF055D11IN1F1092 Insect herbivory Me... 82 9e-014
gb|BQ141173.1|BQ141173 NF016G07PH1F1056 Phoma-infected Medi... 82 9e-014
gb|BM780126.1|BM780126 EST590702 KV2 Medicago truncatula cD... 76 6e-012
gb|BQ148813.1|BQ148813 NF082H03FL1F1031 Developing flower M... 76 6e-012
gb|AW774908.1|AW774908 EST334059 KV3 Medicago truncatula cD... 72 9e-011
gb|AC155894.4| Medicago truncatula chromosome 7 clone mth2-... 70 3e-010
gb|BF641876.1|BF641876 NF051C01IN1F1004 Insect herbivory Me... 58 1e-006
gb|AC148217.15| Medicago truncatula clone mth2-20c19, compl... 52 8e-005
gb|BE325136.2|BE325136 NF087G04ST1F1024 Developing stem Med... 46 0.005
>gb|BG449666.1|BG449666 NF055D11IN1F1092 Insect herbivory Medicago truncatula cDNA clone
NF055D11IN 5', mRNA sequence
Length = 667
Score = 81.8 bits (41), Expect = 9e-014
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| |||||||||||||| |||| ||| || ||||||||||| |||
Sbjct: 476 ataaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgat 535
Query: 294 cagactacacttggaca 310
||||| || ||||||||
Sbjct: 536 cagacaacccttggaca 552
Score = 56.0 bits (28), Expect = 5e-006
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 30 cagtactacgtcggatccaacaactccatccagggggcatgcgtgcagaacgtgctggat 89
|||||||| || || ||||||||| |||| ||||| |||||||| || || ||||| |||
Sbjct: 272 cagtactatgttggttccaacaacaccattcagggagcatgcgttcaaaatgtgcttgat 331
Query: 90 tcgctcatcccggcgcttctcaaggacgagaaccgaaagttcatctatgttgagcaggca 149
|| || || || ||| | | |||| |||| || || |||||||||||||| ||||||
Sbjct: 332 tcccttataccagcgttgttggcggacaagaatcgcaaattcatctatgttgaacaggca 391
Query: 150 ttcttcca 157
||||||||
Sbjct: 392 ttcttcca 399
>gb|BQ141173.1|BQ141173 NF016G07PH1F1056 Phoma-infected Medicago truncatula cDNA clone
NF016G07PH 5', mRNA sequence
Length = 637
Score = 81.8 bits (41), Expect = 9e-014
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| |||||||||||||| |||| ||| || ||||||||||| |||
Sbjct: 424 ataaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgat 483
Query: 294 cagactacacttggaca 310
||||| || ||||||||
Sbjct: 484 cagacaacccttggaca 500
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 129 ttcatctatgttgagcaggcattcttcca 157
|||||||||||||| ||||||||||||||
Sbjct: 319 ttcatctatgttgaacaggcattcttcca 347
>gb|BM780126.1|BM780126 EST590702 KV2 Medicago truncatula cDNA clone pKV2-54G5, mRNA
sequence
Length = 778
Score = 75.8 bits (38), Expect = 6e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcag 408
||||||||||||||||||||||||| || ||||| |||||||||||| | ||||| || |
Sbjct: 526 ttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctg 585
Query: 409 aagtaggattcgat 422
| |||||||||||
Sbjct: 586 agctaggattcgat 599
Score = 71.9 bits (36), Expect = 9e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagggggcatgc 71
||||| |||||||| || ||||||||||| ||||||||||||||||| || |||||
Sbjct: 189 tggcttaagaccgttgatcagtactacgttggatccaacaactccattagaggtgcatgt 248
Query: 72 gtgcagaacgtgctggattc 91
|||||||||||||| |||||
Sbjct: 249 gtgcagaacgtgcttgattc 268
Score = 42.1 bits (21), Expect = 0.079
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 126 aagttcatctatgttgagcaggcattcttccaaagatggtggagg 170
||||| ||||||||||| |||||| ||||| ||||||||||||
Sbjct: 303 aagtttatctatgttgaaatggcatttttccagagatggtggagg 347
>gb|BQ148813.1|BQ148813 NF082H03FL1F1031 Developing flower Medicago truncatula cDNA clone
NF082H03FL 5', mRNA sequence
Length = 374
Score = 75.8 bits (38), Expect = 6e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcag 408
||||||||||||||||||||||||| || ||||| |||||||||||| | ||||| || |
Sbjct: 93 ttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctg 152
Query: 409 aagtaggattcgat 422
| |||||||||||
Sbjct: 153 agctaggattcgat 166
>gb|AW774908.1|AW774908 EST334059 KV3 Medicago truncatula cDNA clone pKV3-24H19, mRNA
sequence
Length = 394
Score = 71.9 bits (36), Expect = 9e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagggggcatgc 71
||||| |||||||| || ||||||||||| ||||||||||||||||| || |||||
Sbjct: 78 tggcttaagaccgttgatcagtactacgttggatccaacaactccattagaggtgcatgt 137
Query: 72 gtgcagaacgtgctggattc 91
|||||||||||||| |||||
Sbjct: 138 gtgcagaacgtgcttgattc 157
Score = 44.1 bits (22), Expect = 0.020
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 228 gaattaataaatggtggcatgtgcatgcacgatgaggc 265
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 294 gaattcataaatggtggtatgtgcatgcatgacgaggc 331
Score = 42.1 bits (21), Expect = 0.079
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 126 aagttcatctatgttgagcaggcattcttccaaagatggtggagg 170
||||| ||||||||||| |||||| ||||| ||||||||||||
Sbjct: 192 aagtttatctatgttgaaatggcatttttccagagatggtggagg 236
>gb|AC155894.4| Medicago truncatula chromosome 7 clone mth2-67b7, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 125354
Score = 69.9 bits (35), Expect = 3e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttac 395
||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 81300 ttggctggcagattgatccgtttggccattctgcagttcaggcttac 81254
Score = 69.9 bits (35), Expect = 3e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 802 aggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatg 861
||||||| ||| || ||||||| || || ||||| ||||| ||||| |||||||||||||
Sbjct: 66361 aggatggacgtgtcaatgctctgtactctacaccctccatatatacagatgcaaaatatg 66302
Query: 862 ctgcaaatgag 872
|||||||||||
Sbjct: 66301 ctgcaaatgag 66291
Score = 63.9 bits (32), Expect = 2e-008
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 240 ggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagact 299
||||||||||| ||||| |||||||| | || || || || |||||||| |||||||||
Sbjct: 67846 ggtggcatgtgtatgcatgatgaggcagtagttcattacatagacatgattgatcagact 67787
Query: 300 acacttggacac 311
||||||||||||
Sbjct: 67786 acacttggacac 67775
Score = 61.9 bits (31), Expect = 8e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct: 82112 tggcttaagaccgttgatcagtactacgttggatccaacaactccat 82066
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 849 gatgcaaaatatgctgcaaatgagcaggggcctct 883
|||||||||||||| || ||||||||| |||||||
Sbjct: 80110 gatgcaaaatatgcagctaatgagcagtggcctct 80076
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 639 tataatgttgaagaacgagtaaatgattttgt 670
||||||||||||||| |||| ||||| |||||
Sbjct: 80671 tataatgttgaagaaagagtcaatgactttgt 80640
>gb|BF641876.1|BF641876 NF051C01IN1F1004 Insect herbivory Medicago truncatula cDNA clone
NF051C01IN 5', mRNA sequence
Length = 481
Score = 58.0 bits (29), Expect = 1e-006
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 30 cagtactacgtcggatccaacaactccatccagggggcatgcgtgcagaacgtgctggat 89
|||||||| || || ||||||||| |||| ||||| |||||||| || || ||||| |||
Sbjct: 294 cagtactatgttggttccaacaacaccattcagggagcatgcgttcaaaatgtgcttgat 353
Query: 90 tcgctcatcccggcgcttctcaaggacgagaaccgaaagttcatctatgttgagcaggca 149
|| || || || ||| | | |||| |||| || || |||||||||||||| ||||||
Sbjct: 354 tcccttataccagcgttgntggcggacaagaatcgcaaattcatctatgttgaacaggca 413
Query: 150 ttcttcca 157
||||||||
Sbjct: 414 ttcttcca 421
>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence
Length = 113210
Score = 52.0 bits (26), Expect = 8e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||||||||||||| ||||| ||||||||||| || | |||||| |||||
Sbjct: 58508 tggcagattgatccttttggacactctgcggtccaaggttacctacttgg 58557
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 699 acgaggacaaatcatatcatgtttacaatggg 730
||||||||||| |||||||||| ||||||||
Sbjct: 60303 acgaggacaaaccatatcatgtggacaatggg 60334
>gb|BE325136.2|BE325136 NF087G04ST1F1024 Developing stem Medicago truncatula cDNA clone
NF087G04ST 5', mRNA sequence
Length = 550
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 849 gatgcaaaatatgctgcaaatgagcaggggcctct 883
|||||||||||||| || ||||||||| |||||||
Sbjct: 327 gatgcaaaatatgcagctaatgagcagtggcctct 361
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 639 tataatgttgaagaacgagtaaatgattttgt 670
||||||||||||||| |||| ||||| |||||
Sbjct: 117 tataatgttgaagaaagagtcaatgactttgt 148
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 263,978
Number of Sequences: 392609
Number of extensions: 263978
Number of successful extensions: 21505
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21460
Number of HSP's gapped (non-prelim): 42
length of query: 888
length of database: 441,732,993
effective HSP length: 20
effective length of query: 868
effective length of database: 433,880,813
effective search space: 376608545684
effective search space used: 376608545684
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)