BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5352090.2.1
         (915 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW685481.1|AW685481  NF030D05NR1F1000 Nodulated root Medi...    56   5e-006
gb|AW686035.1|AW686035  NF032G08NR1F1000 Nodulated root Medi...    56   5e-006
gb|AW736264.1|AW736264  EST332326 KV3 Medicago truncatula cD...    56   5e-006
gb|AW774787.1|AW774787  EST333938 KV3 Medicago truncatula cD...    56   5e-006
gb|BG645083.1|BG645083  EST506702 KV3 Medicago truncatula cD...    56   5e-006
gb|CX530825.1|CX530825  s13dNF33F09MJ076_247665 Methyl Jasmo...    56   5e-006
gb|CX542351.1|CX542351  s13dNF82H11GS094_468018 Germinating ...    40   0.32 

>gb|AW685481.1|AW685481 NF030D05NR1F1000 Nodulated root Medicago truncatula cDNA clone
           NF030D05NR 5', mRNA sequence
          Length = 656

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 439 cgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
           |||||||||| | ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 470 cgtcaagggtttgactctatttcatttaaagagtcatcttcagaaatacaga 521



>gb|AW686035.1|AW686035 NF032G08NR1F1000 Nodulated root Medicago truncatula cDNA clone
           NF032G08NR 5', mRNA sequence
          Length = 658

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 439 cgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
           |||||||||| | ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 433 cgtcaagggtttgactctatttcatttaaagagtcatcttcagaaatacaga 484



>gb|AW736264.1|AW736264 EST332326 KV3 Medicago truncatula cDNA clone pKV3-12O2, mRNA
           sequence
          Length = 547

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 439 cgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
           |||||||||| | ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 309 cgtcaagggtttgactctatttcatttaaagagtcatcttcagaaatacaga 360



>gb|AW774787.1|AW774787 EST333938 KV3 Medicago truncatula cDNA clone pKV3-23N22, mRNA
           sequence
          Length = 694

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 439 cgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
           |||||||||| | ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 348 cgtcaagggtttgactctatttcatttaaagagtcatcttcagaaatacaga 399



>gb|BG645083.1|BG645083 EST506702 KV3 Medicago truncatula cDNA clone pKV3-39M15 5' end,
           mRNA sequence
          Length = 762

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 439 cgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
           |||||||||| | ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 348 cgtcaagggtttgactctatttcatttaaagagtcatcttcagaaatacaga 399



>gb|CX530825.1|CX530825 s13dNF33F09MJ076_247665 Methyl Jasmonate-Elicited Root Cell
           Suspension Culture Medicago truncatula cDNA, mRNA
           sequence
          Length = 612

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 439 cgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacaga 490
           |||||||||| | ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 366 cgtcaagggtttgactctatttcatttaaagagtcatcttcagaaatacaga 417



>gb|CX542351.1|CX542351 s13dNF82H11GS094_468018 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 608

 Score = 40.1 bits (20), Expect = 0.32
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
           ||||| || ||||||||||| ||||  ||  | |||||||||||||||||||
Sbjct: 18  atgggtgtgaagggtcttaccctttaccatctcaagagccatcttcagaaat 69



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 229,478
Number of Sequences: 392609
Number of extensions: 229478
Number of successful extensions: 16962
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16950
Number of HSP's gapped (non-prelim): 12
length of query: 915
length of database: 441,732,993
effective HSP length: 20
effective length of query: 895
effective length of database: 433,880,813
effective search space: 388323327635
effective search space used: 388323327635
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)