BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4548790.2.1
(1044 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infect... 50 4e-004
gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmo... 50 4e-004
emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2... 50 4e-004
gb|BG456347.1|BG456347 NF078C02PL1F1008 Phosphate starved l... 48 0.002
gb|BG456362.1|BG456362 NF076H02PL1F1026 Phosphate starved l... 46 0.006
gb|CX525955.1|CX525955 s13dNF32G01AT008_509654 Aphid-Infect... 46 0.006
gb|CX539191.1|CX539191 s13dNF62B11GS089_461642 Germinating ... 46 0.006
gb|AQ841687.1|AQ841687 T137671b shotgun sub-library of BAC ... 42 0.093
gb|AQ841688.1|AQ841688 T137674b shotgun sub-library of BAC ... 42 0.093
gb|BE240488.1|BE240488 EST404537 MHRP- Medicago truncatula ... 42 0.093
gb|BG581975.1|BG581975 EST483712 GVN Medicago truncatula cD... 42 0.093
gb|BG645331.1|BG645331 EST506950 KV3 Medicago truncatula cD... 42 0.093
gb|BG645334.1|BG645334 EST506953 KV3 Medicago truncatula cD... 42 0.093
gb|BI309709.1|BI309709 EST531119 GPOD Medicago truncatula c... 42 0.093
gb|BI311879.1|BI311879 EST5313629 GESD Medicago truncatula ... 42 0.093
gb|BM780176.1|BM780176 EST590764 KV2 Medicago truncatula cD... 42 0.093
gb|BQ165503.1|BQ165503 EST611372 KVKC Medicago truncatula c... 42 0.093
gb|AJ497930.1|AJ497930 AJ497930 MTFLOW Medicago truncatula ... 42 0.093
gb|CF068327.1|CF068327 EST669048 MTUS Medicago truncatula c... 42 0.093
gb|CF069544.1|CF069544 EST670265 MTUS Medicago truncatula c... 42 0.093
gb|CX516685.1|CX516685 s13dNF03E06VI051_390379 Virus-Infect... 42 0.093
gb|CX519794.1|CX519794 s13dNF52G07VI056_443640 Virus-Infect... 42 0.093
gb|CX521862.1|CX521862 s13dNF1FB07VI059_469528 Virus-Infect... 42 0.093
gb|CX522719.1|CX522719 s13dNF90D03VI030_471242 Virus-Infect... 42 0.093
gb|CX538850.1|CX538850 s13dNF0GB12GS093_460956 Germinating ... 42 0.093
>gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 198
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgc 59
|||||||| ||||||||||||||||||||
Sbjct: 155 cacgccaccttctacggcggcagcgacgc 183
>gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 605
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 31 cacgccacgttctacggcggcagcgacgc 59
|||||||| ||||||||||||||||||||
Sbjct: 93 cacgccaccttctacggcggcagcgacgc 121
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 433 cacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgt 480
||||||||||||||| || ||||||||| |||| || ||||| |||||
Sbjct: 488 cacaatcaacggctttcgttacttcaacttggttctaatcaccaacgt 535
>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
Length = 136557
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 31 cacgccacgttctacggcggcagcgacgc 59
|||||||| ||||||||||||||||||||
Sbjct: 95001 cacgccaccttctacggcggcagcgacgc 94973
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 433 cacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgt 480
||||||||||||||| || ||||||||| |||| || ||||| |||||
Sbjct: 94310 cacaatcaacggctttcgttacttcaacttggttctaatcaccaacgt 94263
>gb|BG456347.1|BG456347 NF078C02PL1F1008 Phosphate starved leaf Medicago truncatula cDNA
clone NF078C02PL 5', mRNA sequence
Length = 555
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 433 cacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgt 480
||||||||||||||| || ||||||||| |||| || ||||| |||||
Sbjct: 299 cacaatcaacggctttcgttacttcaacttggttctaatcaccaacgt 346
>gb|BG456362.1|BG456362 NF076H02PL1F1026 Phosphate starved leaf Medicago truncatula cDNA
clone NF076H02PL 5', mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggt 465
|||||||||||||| ||||| ||||||||| ||||
Sbjct: 548 ttcacaatcaacggtttccgttacttcaacttggt 582
>gb|CX525955.1|CX525955 s13dNF32G01AT008_509654 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 597
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggt 465
|||||||||||||| ||||| ||||||||| ||||
Sbjct: 557 ttcacaatcaacggtttccgttacttcaacttggt 591
>gb|CX539191.1|CX539191 s13dNF62B11GS089_461642 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 647
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggt 465
|||||||||||||| ||||| ||||||||| ||||
Sbjct: 540 ttcacaatcaacggtttccgttacttcaacttggt 574
>gb|AQ841687.1|AQ841687 T137671b shotgun sub-library of BAC clone 10F20 Medicago truncatula
genomic clone 10-F-20-015, DNA sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgc 579
|||||||| ||||||||||| ||||||||
Sbjct: 338 aactggggtcagaactggcaatccaacgc 366
>gb|AQ841688.1|AQ841688 T137674b shotgun sub-library of BAC clone 10F20 Medicago truncatula
genomic clone 10-F-20-018, DNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgc 579
|||||||| ||||||||||| ||||||||
Sbjct: 337 aactggggtcagaactggcaatccaacgc 365
>gb|BE240488.1|BE240488 EST404537 MHRP- Medicago truncatula cDNA clone pMHRP-45G18, mRNA
sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgc 579
|||||||| ||||||||||| ||||||||
Sbjct: 28 aactggggtcagaactggcaatccaacgc 56
>gb|BG581975.1|BG581975 EST483712 GVN Medicago truncatula cDNA clone pGVN-66I24 5' end,
mRNA sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 660 atgtctaggaactgggggcagaactggca 688
>gb|BG645331.1|BG645331 EST506950 KV3 Medicago truncatula cDNA clone pKV3-39L24 5' end,
mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 448 atgtctaggaactgggggcagaactggca 420
>gb|BG645334.1|BG645334 EST506953 KV3 Medicago truncatula cDNA clone pKV3-39N8 5' end, mRNA
sequence
Length = 781
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 478 atgtctaggaactgggggcagaactggca 450
>gb|BI309709.1|BI309709 EST531119 GPOD Medicago truncatula cDNA clone pGPOD-13L4 5' end,
mRNA sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 680 atgtctaggaactgggggcagaactggca 708
>gb|BI311879.1|BI311879 EST5313629 GESD Medicago truncatula cDNA clone pGESD15D8 5' end,
mRNA sequence
Length = 752
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 404 atgtctaggaactgggggcagaactggca 432
>gb|BM780176.1|BM780176 EST590764 KV2 Medicago truncatula cDNA clone pKV2-54C20, mRNA
sequence
Length = 770
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 675 atgtctaggaactgggggcagaactggca 703
>gb|BQ165503.1|BQ165503 EST611372 KVKC Medicago truncatula cDNA clone pKVKC-9F12, mRNA
sequence
Length = 786
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 485 atgtctaggaactgggggcagaactggca 513
>gb|AJ497930.1|AJ497930 AJ497930 MTFLOW Medicago truncatula cDNA clone mt--abc955116g03,
mRNA sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 aactggggccagaactggcagtccaacgc 579
|||||||| ||||||||||| ||||||||
Sbjct: 321 aactggggtcagaactggcaatccaacgc 349
>gb|CF068327.1|CF068327 EST669048 MTUS Medicago truncatula cDNA clone MTUS-6F2, mRNA
sequence
Length = 784
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 619 atgtctaggaactgggggcagaactggca 647
>gb|CF069544.1|CF069544 EST670265 MTUS Medicago truncatula cDNA clone MTUS-21E11, mRNA
sequence
Length = 794
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 646 atgtctaggaactgggggcagaactggca 674
>gb|CX516685.1|CX516685 s13dNF03E06VI051_390379 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 545
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 440 atgtctaggaactgggggcagaactggca 468
>gb|CX519794.1|CX519794 s13dNF52G07VI056_443640 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 215 atgtctaggaactgggggcagaactggca 243
>gb|CX521862.1|CX521862 s13dNF1FB07VI059_469528 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 440 atgtctaggaactgggggcagaactggca 468
>gb|CX522719.1|CX522719 s13dNF90D03VI030_471242 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 484
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 440 atgtctaggaactgggggcagaactggca 468
>gb|CX538850.1|CX538850 s13dNF0GB12GS093_460956 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 542 atgtccaggaactggggccagaactggca 570
||||| ||||||||||| |||||||||||
Sbjct: 248 atgtctaggaactgggggcagaactggca 276
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,942
Number of Sequences: 392609
Number of extensions: 110942
Number of successful extensions: 7806
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7769
Number of HSP's gapped (non-prelim): 37
length of query: 1044
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1024
effective length of database: 433,880,813
effective search space: 444293952512
effective search space used: 444293952512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)