BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4424417.2.1
         (1137 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC145109.42|  Medicago truncatula clone mth2-25f20, WORKI...    46   0.006
emb|CR341603.1|  mte1-74A21FM1 BAC end, cultivar Jemalong A1...    40   0.40 
gb|AC158377.1|  Medicago truncatula chromosome 2 clone mth2-...    40   0.40 

>gb|AC145109.42| Medicago truncatula clone mth2-25f20, WORKING DRAFT SEQUENCE, 2 ordered
             pieces
          Length = 118109

 Score = 46.1 bits (23), Expect = 0.006
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 843   attatttaagttttttaatgtatatttttca 873
             ||||| |||||||||| ||||||||||||||
Sbjct: 43216 attatataagtttttttatgtatatttttca 43246



>emb|CR341603.1| mte1-74A21FM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 646

 Score = 40.1 bits (20), Expect = 0.40
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 838 tataaattatttaagttttt 857
           ||||||||||||||||||||
Sbjct: 497 tataaattatttaagttttt 516



>gb|AC158377.1| Medicago truncatula chromosome 2 clone mth2-74a13, *** SEQUENCING IN
             PROGRESS ***, 12 unordered pieces
          Length = 132622

 Score = 40.1 bits (20), Expect = 0.40
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 794   ttttccctctatcatttggt 813
             ||||||||||||||||||||
Sbjct: 35570 ttttccctctatcatttggt 35551



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318,353
Number of Sequences: 392609
Number of extensions: 318353
Number of successful extensions: 27257
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27230
Number of HSP's gapped (non-prelim): 27
length of query: 1137
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1117
effective length of database: 433,880,813
effective search space: 484644868121
effective search space used: 484644868121
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)