BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3848982.2.1
         (697 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR333103.1|  mte1-62H8FM1 BAC end, cultivar Jemalong A17...    40   0.24 
gb|AC160013.10|  Medicago truncatula clone mth2-162b23, WORK...    40   0.24 
gb|AC159535.5|  Medicago truncatula clone mth2-152f22, WORKI...    40   0.24 

>emb|CR333103.1| mte1-62H8FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 675

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 640 aaattcaacatatatataat 659
           ||||||||||||||||||||
Sbjct: 606 aaattcaacatatatataat 587



>gb|AC160013.10| Medicago truncatula clone mth2-162b23, WORKING DRAFT SEQUENCE, 4
             ordered pieces
          Length = 117818

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 640   aaattcaacatatatataat 659
             ||||||||||||||||||||
Sbjct: 88593 aaattcaacatatatataat 88574



>gb|AC159535.5| Medicago truncatula clone mth2-152f22, WORKING DRAFT SEQUENCE, 7
             unordered pieces
          Length = 129622

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 640   aaattcaacatatatataat 659
             ||||||||||||||||||||
Sbjct: 95009 aaattcaacatatatataat 94990



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,925
Number of Sequences: 392609
Number of extensions: 107925
Number of successful extensions: 8563
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8557
Number of HSP's gapped (non-prelim): 6
length of query: 697
length of database: 441,732,993
effective HSP length: 19
effective length of query: 678
effective length of database: 434,273,422
effective search space: 294437380116
effective search space used: 294437380116
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)