BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829479.2.1
(1245 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR336217.1| mte1-67O7FM1 BAC end, cultivar Jemalong A17... 40 0.44
gb|AW694598.1|AW694598 NF078B11ST1F1092 Developing stem Med... 40 0.44
gb|AW694707.1|AW694707 NF079C07ST1F1053 Developing stem Med... 40 0.44
gb|BF642398.1|BF642398 NF056C01IN1F1004 Insect herbivory Me... 40 0.44
gb|AW685678.2|AW685678 NF033E07NR1F1000 Nodulated root Medi... 40 0.44
gb|BE325266.2|BE325266 NF119C06ST1F1049 Developing stem Med... 40 0.44
gb|BE321878.2|BE321878 NF045G10IN1F1081 Insect herbivory Me... 40 0.44
gb|BE322756.2|BE322756 NF047C08IN1F1055 Insect herbivory Me... 40 0.44
gb|BG449107.1|BG449107 NF005A05IN1F1037 Insect herbivory Me... 40 0.44
gb|BG449356.1|BG449356 NF046G10IN1F1082 Insect herbivory Me... 40 0.44
gb|BG449462.1|BG449462 NF046F08IN1F1073 Insect herbivory Me... 40 0.44
gb|BG455339.1|BG455339 NF046H07PL1F1062 Phosphate starved l... 40 0.44
gb|BI270562.1|BI270562 NF010C09FL1F1070 Developing flower M... 40 0.44
gb|CA917599.1|CA917599 EST641746 GPOD Medicago truncatula c... 40 0.44
gb|CX524523.1|CX524523 s13dNF07A04AT021_448390 Aphid-Infect... 40 0.44
gb|CX524699.1|CX524699 s13dNF10A11AT085_478032 Aphid-Infect... 40 0.44
gb|CX525276.1|CX525276 s13dNF16D11AT094_479186 Aphid-Infect... 40 0.44
gb|CX526844.1|CX526844 s13dNF27C04AT034_514200 Aphid-Infect... 40 0.44
gb|CX527151.1|CX527151 s13dNF40E06AT051_514814 Aphid-Infect... 40 0.44
gb|CX527307.1|CX527307 s13dNF42B12AT101_515126 Aphid-Infect... 40 0.44
>emb|CR336217.1| mte1-67O7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 715
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 349 ccgtcggcgccgccgccacc 330
>gb|AW694598.1|AW694598 NF078B11ST1F1092 Developing stem Medicago truncatula cDNA clone
NF078B11ST 5', mRNA sequence
Length = 664
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 370 ccgtcggcgccgccgccacc 351
>gb|AW694707.1|AW694707 NF079C07ST1F1053 Developing stem Medicago truncatula cDNA clone
NF079C07ST 5', mRNA sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 276 ccgtcggcgccgccgccacc 257
>gb|BF642398.1|BF642398 NF056C01IN1F1004 Insect herbivory Medicago truncatula cDNA clone
NF056C01IN 5', mRNA sequence
Length = 414
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 281 ccgtcggcgccgccgccacc 262
>gb|AW685678.2|AW685678 NF033E07NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF033E07NR 5', mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 302 ccgtcggcgccgccgccacc 283
>gb|BE325266.2|BE325266 NF119C06ST1F1049 Developing stem Medicago truncatula cDNA clone
NF119C06ST 5', mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 284 ccgtcggcgccgccgccacc 265
>gb|BE321878.2|BE321878 NF045G10IN1F1081 Insect herbivory Medicago truncatula cDNA clone
NF045G10IN 5', mRNA sequence
Length = 350
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 265 ccgtcggcgccgccgccacc 246
>gb|BE322756.2|BE322756 NF047C08IN1F1055 Insect herbivory Medicago truncatula cDNA clone
NF047C08IN 5', mRNA sequence
Length = 448
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 296 ccgtcggcgccgccgccacc 277
>gb|BG449107.1|BG449107 NF005A05IN1F1037 Insect herbivory Medicago truncatula cDNA clone
NF005A05IN 5', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 269 ccgtcggcgccgccgccacc 250
>gb|BG449356.1|BG449356 NF046G10IN1F1082 Insect herbivory Medicago truncatula cDNA clone
NF046G10IN 5', mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 274 ccgtcggcgccgccgccacc 255
>gb|BG449462.1|BG449462 NF046F08IN1F1073 Insect herbivory Medicago truncatula cDNA clone
NF046F08IN 5', mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 274 ccgtcggcgccgccgccacc 255
>gb|BG455339.1|BG455339 NF046H07PL1F1062 Phosphate starved leaf Medicago truncatula cDNA
clone NF046H07PL 5', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 174 ccgtcggcgccgccgccacc 155
>gb|BI270562.1|BI270562 NF010C09FL1F1070 Developing flower Medicago truncatula cDNA clone
NF010C09FL 5', mRNA sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 43 ccgtcggcgccgccgccacc 24
>gb|CA917599.1|CA917599 EST641746 GPOD Medicago truncatula cDNA clone GPOD-36P3, mRNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 246 ccgtcggcgccgccgccacc 227
>gb|CX524523.1|CX524523 s13dNF07A04AT021_448390 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 475
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 307 ccgtcggcgccgccgccacc 288
>gb|CX524699.1|CX524699 s13dNF10A11AT085_478032 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 277 ccgtcggcgccgccgccacc 258
>gb|CX525276.1|CX525276 s13dNF16D11AT094_479186 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 305 ccgtcggcgccgccgccacc 286
>gb|CX526844.1|CX526844 s13dNF27C04AT034_514200 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 301 ccgtcggcgccgccgccacc 282
>gb|CX527151.1|CX527151 s13dNF40E06AT051_514814 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 52 ccgtcggcgccgccgccacc 33
>gb|CX527307.1|CX527307 s13dNF42B12AT101_515126 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1022 ccgtcggcgccgccgccacc 1041
||||||||||||||||||||
Sbjct: 305 ccgtcggcgccgccgccacc 286
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 207,053
Number of Sequences: 392609
Number of extensions: 207053
Number of successful extensions: 14875
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14855
Number of HSP's gapped (non-prelim): 20
length of query: 1245
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1225
effective length of database: 433,880,813
effective search space: 531503995925
effective search space used: 531503995925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)