BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802544.2.1
(814 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG452539.1|BG452539 NF103B03LF1F1026 Developing leaf Med... 80 3e-013
gb|BF004292.1|BF004292 EST432790 KV1 Medicago truncatula cD... 72 8e-011
gb|DW016986.1|DW016986 EST1225947 MTY Medicago truncatula c... 72 8e-011
gb|BG582341.1|BG582341 EST484084 GVN Medicago truncatula cD... 70 3e-010
gb|BG457946.1|BG457946 NF036F09PL1F1078 Phosphate starved l... 64 2e-008
gb|BE941485.1|BE941485 EST421064 MGHG Medicago truncatula c... 58 1e-006
gb|BE319900.2|BE319900 NF023B01RT1F1009 Developing root Med... 58 1e-006
gb|BG448500.1|BG448500 NF036H08RT1F1073 Developing root Med... 58 1e-006
gb|CA922041.1|CA922041 EST639759 MTUS Medicago truncatula c... 58 1e-006
gb|CA922048.1|CA922048 EST639766 MTUS Medicago truncatula c... 58 1e-006
gb|DW017529.1|DW017529 EST1226490 MTY Medicago truncatula c... 58 1e-006
gb|AW776544.1|AW776544 EST335609 DSIL Medicago truncatula c... 50 3e-004
gb|AW560051.1|AW560051 EST315099 DSIR Medicago truncatula c... 48 0.001
gb|AW560052.1|AW560052 EST315100 DSIR Medicago truncatula c... 48 0.001
gb|BG581840.1|BG581840 EST483576 GVN Medicago truncatula cD... 48 0.001
gb|BG583087.1|BG583087 EST484837 GVN Medicago truncatula cD... 48 0.001
gb|CB891208.1|CB891208 EST648177 KV3 Medicago truncatula cD... 48 0.001
gb|AL385279.1|AL385279 MtBC27E09F1 MtBC Medicago truncatula... 46 0.005
gb|AL372363.1|AL372363 MtBA50D06F1 MtBA Medicago truncatula... 44 0.018
gb|BE941371.1|BE941371 EST420950 MGHG Medicago truncatula c... 44 0.018
gb|BF648883.1|BF648883 NF051B06EC1F1047 Elicited cell cultu... 44 0.018
gb|BF650054.1|BF650054 NF084F10EC1F1089 Elicited cell cultu... 44 0.018
gb|BQ255347.1|BQ255347 MTNAI18TKM KVKC Medicago truncatula ... 44 0.018
gb|AJ503502.1|AJ503502 AJ503502 MTAMP Medicago truncatula c... 44 0.018
gb|CX539868.1|CX539868 s13dNF0FB02GS013_463008 Germinating ... 44 0.018
gb|BE240133.1|BE240133 EST404182 MHRP- Medicago truncatula ... 42 0.072
gb|BE325895.2|BE325895 NF083H10ST1F1089 Developing stem Med... 42 0.072
gb|AW687038.1|AW687038 NF005C09RT1F1069 Developing root Med... 40 0.28
gb|AL371444.1|AL371444 MtBA44C04F1 MtBA Medicago truncatula... 40 0.28
gb|AL383118.1|AL383118 MtBC11H05F1 MtBC Medicago truncatula... 40 0.28
>gb|BG452539.1|BG452539 NF103B03LF1F1026 Developing leaf Medicago truncatula cDNA clone
NF103B03LF 5', mRNA sequence
Length = 683
Score = 79.8 bits (40), Expect = 3e-013
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 376 tttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggat 435
||||||| | |||||||| |||||| ||||| |||| |||||||||||||| || ||||
Sbjct: 624 tttgagtgaggatgttttntggtggccttatatatattgtcttgttcaatgttcgtggat 565
Query: 436 catcaacagacttgattgtatacgttgcaacatcgtcttcatc 478
|||||| | ||| ||||| || ||||||||||| ||||||||
Sbjct: 564 catcaattgtcttaattgtgtatgttgcaacatcatcttcatc 522
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 651 tcatcaaatgtaacccttcctggttcaag 679
||||||||||| || ||||||||||||||
Sbjct: 349 tcatcaaatgtgactcttcctggttcaag 321
>gb|BF004292.1|BF004292 EST432790 KV1 Medicago truncatula cDNA clone pKV1-17O13, mRNA
sequence
Length = 453
Score = 71.9 bits (36), Expect = 8e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
|||||||||||||| ||||| |||| |||||||||||||| || |||||||||| | |
Sbjct: 422 atgttttctggtggccttatatatattgtcttgttcaatgttcgtggatcatcaattgtc 363
Query: 447 ttgattgtatacgttgcaacatcgtcttcatc 478
| ||||| || ||||||||||| ||||||||
Sbjct: 362 tcaattgtgtatgttgcaacatcatcttcatc 331
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 651 tcatcaaatgtaacccttcctggttcaag 679
||||||||||| || ||||||||||||||
Sbjct: 157 tcatcaaatgtgactcttcctggttcaag 129
>gb|DW016986.1|DW016986 EST1225947 MTY Medicago truncatula cDNA clone MTYAO08, mRNA
sequence
Length = 777
Score = 71.9 bits (36), Expect = 8e-011
Identities = 88/104 (84%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 376 tttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggat 435
||||||| | ||||||||||||||| ||||| |||| |||||||||||||| || ||||
Sbjct: 746 tttgagtgaggatgttttctggtggccttatatatattgtcttgttcaatgttcgtggat 687
Query: 436 catc-aacagacttgattgtatacgttgcaacatcgtcttcatc 478
|||| || | ||| ||||| || ||||||||||| ||||||||
Sbjct: 686 catcaaattgtcttaattgtgtatgttgcaacatcatcttcatc 643
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 651 tcatcaaatgtaacccttcctggttcaag 679
||||||||||| || ||||||||||||||
Sbjct: 470 tcatcaaatgtgactcttcctggttcaag 442
>gb|BG582341.1|BG582341 EST484084 GVN Medicago truncatula cDNA clone pGVN-69K16 5' end,
mRNA sequence
Length = 692
Score = 69.9 bits (35), Expect = 3e-010
Identities = 86/103 (83%)
Strand = Plus / Minus
Query: 376 tttgagtcaagatgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggat 435
||||||| | ||||||||||||||| ||||| |||| |||||||||||| || ||||
Sbjct: 691 tttgagtgaggatgttttctggtggccttatatatatgttcttgttcaatgttcgtggat 632
Query: 436 catcaacagacttgattgtatacgttgcaacatcgtcttcatc 478
|||||| | ||| ||||| || ||||||||||| ||||||||
Sbjct: 631 catcaattgtcttaattgtgtatgttgcaacatcatcttcatc 589
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 651 tcatcaaatgtaacccttcctggttcaag 679
||||||||||| || ||||||||||||||
Sbjct: 416 tcatcaaatgtgactcttcctggttcaag 388
>gb|BG457946.1|BG457946 NF036F09PL1F1078 Phosphate starved leaf Medicago truncatula cDNA
clone NF036F09PL 5', mRNA sequence
Length = 685
Score = 63.9 bits (32), Expect = 2e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 395 tggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagacttgattgt 454
|||||| ||||| |||| |||||||||||||| || |||||||||| | ||| |||||
Sbjct: 684 tggtggccttatatatattgtcttgttcaatgttcgtggatcatcaattgtcttaattgt 625
Query: 455 atacgttgcaacatcgtcttcatc 478
|| ||||||||||| ||||||||
Sbjct: 624 gtatgttgcaacatcatcttcatc 601
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 651 tcatcaaatgtaacccttcctggttcaag 679
||||||||||| || ||||||||||||||
Sbjct: 428 tcatcaaatgtgactcttcctggttcaag 400
>gb|BE941485.1|BE941485 EST421064 MGHG Medicago truncatula cDNA clone pMGHG-4K17, mRNA
sequence
Length = 502
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
||||||||| ||||||| | ||||| ||| ||||| || | ||||||||||| | | |
Sbjct: 349 atgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatcatctattgtc 290
Query: 447 ttgattgtatacgttgcaacatcgtcttcatca 479
||||||||||| ||||||||||| | |||||||
Sbjct: 289 ttgattgtatatgttgcaacatcatattcatca 257
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 128 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 69
Query: 668 tcctgg 673
||||||
Sbjct: 68 tcctgg 63
>gb|BE319900.2|BE319900 NF023B01RT1F1009 Developing root Medicago truncatula cDNA clone
NF023B01RT 5', mRNA sequence
Length = 319
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
||||||||| ||||||| | ||||| ||| ||||| || | ||||||||||| | | |
Sbjct: 173 atgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatcatctattgtc 114
Query: 447 ttgattgtatacgttgcaacatcgtcttcatca 479
||||||||||| ||||||||||| | |||||||
Sbjct: 113 ttgattgtatatgttgcaacatcatattcatca 81
>gb|BG448500.1|BG448500 NF036H08RT1F1073 Developing root Medicago truncatula cDNA clone
NF036H08RT 5', mRNA sequence
Length = 588
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
||||||||| ||||||| | ||||| ||| ||||| || | ||||||||||| | | |
Sbjct: 173 atgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatcatctattgtc 114
Query: 447 ttgattgtatacgttgcaacatcgtcttcatca 479
||||||||||| ||||||||||| | |||||||
Sbjct: 113 ttgattgtatatgttgcaacatcatattcatca 81
>gb|CA922041.1|CA922041 EST639759 MTUS Medicago truncatula cDNA clone MTUS-48A7, mRNA
sequence
Length = 828
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
||||||||| ||||||| | ||||| ||| ||||| || | ||||||||||| | | |
Sbjct: 469 atgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatcatctattgtc 528
Query: 447 ttgattgtatacgttgcaacatcgtcttcatca 479
||||||||||| ||||||||||| | |||||||
Sbjct: 529 ttgattgtatatgttgcaacatcatattcatca 561
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 690 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 749
Query: 668 tcctgg 673
||||||
Sbjct: 750 tcctgg 755
>gb|CA922048.1|CA922048 EST639766 MTUS Medicago truncatula cDNA clone MTUS-48B7, mRNA
sequence
Length = 803
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
||||||||| ||||||| | ||||| ||| ||||| || | ||||||||||| | | |
Sbjct: 469 atgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatcatctattgtc 528
Query: 447 ttgattgtatacgttgcaacatcgtcttcatca 479
||||||||||| ||||||||||| | |||||||
Sbjct: 529 ttgattgtatatgttgcaacatcatattcatca 561
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 690 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 749
Query: 668 tcctgg 673
||||||
Sbjct: 750 tcctgg 755
>gb|DW017529.1|DW017529 EST1226490 MTY Medicago truncatula cDNA clone MTYAU78, mRNA
sequence
Length = 750
Score = 58.0 bits (29), Expect = 1e-006
Identities = 77/93 (82%)
Strand = Plus / Minus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
||||||||| ||||||| | ||||| ||| ||||| || | ||||||||||| | | |
Sbjct: 722 atgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatcatctattgtc 663
Query: 447 ttgattgtatacgttgcaacatcgtcttcatca 479
||||||||||| ||||||||||| | |||||||
Sbjct: 662 ttgattgtatatgttgcaacatcatattcatca 630
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 501 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 442
Query: 668 tcctgg 673
||||||
Sbjct: 441 tcctgg 436
>gb|AW776544.1|AW776544 EST335609 DSIL Medicago truncatula cDNA clone pDSIL-8O15, mRNA
sequence
Length = 646
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 651 tcatcaaatgtaacccttcctggttcaagagcatgccccat 691
||||||||||| || |||||||||||||| ||||| |||||
Sbjct: 421 tcatcaaatgtgactcttcctggttcaagtgcatgtcccat 381
>gb|AW560051.1|AW560051 EST315099 DSIR Medicago truncatula cDNA clone pDSIR-26G17, mRNA
sequence
Length = 723
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttc 475
|||||||||||||| ||||||||||| || |||| ||| |||||
Sbjct: 644 ggatcatcaacagatttgattgtataagtagcaatatcctcttc 601
>gb|AW560052.1|AW560052 EST315100 DSIR Medicago truncatula cDNA clone pDSIR-26G17, mRNA
sequence
Length = 756
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttc 475
|||||||||||||| ||||||||||| || |||| ||| |||||
Sbjct: 643 ggatcatcaacagatttgattgtataagtagcaatatcctcttc 600
>gb|BG581840.1|BG581840 EST483576 GVN Medicago truncatula cDNA clone pGVN-66C9 5' end, mRNA
sequence
Length = 808
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttc 475
|||||||||||||| ||||||||||| || |||| ||| |||||
Sbjct: 735 ggatcatcaacagatttgattgtataagtagcaatatcctcttc 692
>gb|BG583087.1|BG583087 EST484837 GVN Medicago truncatula cDNA clone pGVN-71J7 5' end, mRNA
sequence
Length = 826
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttc 475
|||||||||||||| ||||||||||| || |||| ||| |||||
Sbjct: 727 ggatcatcaacagatttgattgtataagtagcaatatcctcttc 684
>gb|CB891208.1|CB891208 EST648177 KV3 Medicago truncatula cDNA clone KV3-49B23, mRNA
sequence
Length = 748
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 432 ggatcatcaacagacttgattgtatacgttgcaacatcgtcttc 475
|||||||||||||| ||||||||||| || |||| ||| |||||
Sbjct: 585 ggatcatcaacagatttgattgtataagtagcaatatcctcttc 542
>gb|AL385279.1|AL385279 MtBC27E09F1 MtBC Medicago truncatula cDNA clone MtBC27E09 T3, mRNA
sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 207 atttcaaaatttgtcaagcaaccttcatagaaaat 241
||||||||||||| ||| || ||||||||||||||
Sbjct: 224 atttcaaaatttgccaaacacccttcatagaaaat 258
>gb|AL372363.1|AL372363 MtBA50D06F1 MtBA Medicago truncatula cDNA clone MtBA50D06 T3, mRNA
sequence
Length = 476
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 449 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 390
Query: 668 tcctgg 673
||||||
Sbjct: 389 tcctgg 384
>gb|BE941371.1|BE941371 EST420950 MGHG Medicago truncatula cDNA clone pMGHG-3H6, mRNA
sequence
Length = 516
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 457 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 398
Query: 668 tcctgg 673
||||||
Sbjct: 397 tcctgg 392
>gb|BF648883.1|BF648883 NF051B06EC1F1047 Elicited cell culture Medicago truncatula cDNA
clone NF051B06EC 5', mRNA sequence
Length = 608
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 472 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 413
Query: 668 tcctgg 673
||||||
Sbjct: 412 tcctgg 407
>gb|BF650054.1|BF650054 NF084F10EC1F1089 Elicited cell culture Medicago truncatula cDNA
clone NF084F10EC 5', mRNA sequence
Length = 618
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 475 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 416
Query: 668 tcctgg 673
||||||
Sbjct: 415 tcctgg 410
>gb|BQ255347.1|BQ255347 MTNAI18TKM KVKC Medicago truncatula cDNA clone pKVKC-9B6, mRNA
sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 432 ggatcatcaacagacttgattgtata 457
|||||||||||||| |||||||||||
Sbjct: 689 ggatcatcaacagatttgattgtata 664
>gb|AJ503502.1|AJ503502 AJ503502 MTAMP Medicago truncatula cDNA clone mtgmadc120034h05,
mRNA sequence
Length = 429
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 333 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 274
Query: 668 tcctgg 673
||||||
Sbjct: 273 tcctgg 268
>gb|CX539868.1|CX539868 s13dNF0FB02GS013_463008 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 599
Score = 44.1 bits (22), Expect = 0.018
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 608 aggaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaaccct 667
||||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||
Sbjct: 472 aggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttaccct 413
Query: 668 tcctgg 673
||||||
Sbjct: 412 tcctgg 407
>gb|BE240133.1|BE240133 EST404182 MHRP- Medicago truncatula cDNA clone pMHRP-43E23, mRNA
sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.072
Identities = 75/93 (80%)
Strand = Plus / Minus
Query: 387 atgttttctggtggtcttatgtatagtgtcttgttcaatgcgcgaggatcatcaacagac 446
||||||||| ||||||| | ||||| ||| ||||| || | ||||||||||| | | |
Sbjct: 156 atgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatcatctattgtc 97
Query: 447 ttgattgtatacgttgcaacatcgtcttcatca 479
||||||||||| || || ||||| | |||||||
Sbjct: 96 ttgattgtatatgtcgccacatcatattcatca 64
>gb|BE325895.2|BE325895 NF083H10ST1F1089 Developing stem Medicago truncatula cDNA clone
NF083H10ST 5', mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.072
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 651 tcatcaaatgtaacccttcctggttcaag 679
||||||||||| || ||||||||||||||
Sbjct: 444 tcatcaaatgtgactcttcctggttcaag 416
>gb|AW687038.1|AW687038 NF005C09RT1F1069 Developing root Medicago truncatula cDNA clone
NF005C09RT 5', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.28
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 610 gaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttc 669
||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||||
Sbjct: 472 gaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttacccttc 413
Query: 670 ctgg 673
||||
Sbjct: 412 ctgg 409
>gb|AL371444.1|AL371444 MtBA44C04F1 MtBA Medicago truncatula cDNA clone MtBA44C04 T3, mRNA
sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.28
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 610 gaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttc 669
||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||||
Sbjct: 450 gaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttacccttc 391
Query: 670 ctgg 673
||||
Sbjct: 390 ctgg 387
>gb|AL383118.1|AL383118 MtBC11H05F1 MtBC Medicago truncatula cDNA clone MtBC11H05 T3, mRNA
sequence
Length = 477
Score = 40.1 bits (20), Expect = 0.28
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 610 gaatgttggcatcttctattgcacgccttaggtccatcttttcatcaaatgtaacccttc 669
||||||| || ||||||||||| ||||| |||| || ||||||||||| |||||||
Sbjct: 477 gaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttacccttc 418
Query: 670 ctgg 673
||||
Sbjct: 417 ctgg 414
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 205,034
Number of Sequences: 392609
Number of extensions: 205034
Number of successful extensions: 15474
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 15415
Number of HSP's gapped (non-prelim): 53
length of query: 814
length of database: 441,732,993
effective HSP length: 20
effective length of query: 794
effective length of database: 433,880,813
effective search space: 344501365522
effective search space used: 344501365522
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)