BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA660578.1|AA660578 00464 MtRHE Medicago truncatula cDNA... 50 2e-004
gb|AA660590.1|AA660590 00476 MtRHE Medicago truncatula cDNA... 50 2e-004
gb|BE322931.1|BE322931 NF025A06IN1F1038 Insect herbivory Me... 50 2e-004
gb|BF648256.1|BF648256 NF045H03EC1F1031 Elicited cell cultu... 50 2e-004
gb|BI271778.1|BI271778 NF019A05FL1F1036 Developing flower M... 50 2e-004
gb|BQ164947.1|BQ164947 EST610816 KVKC Medicago truncatula c... 50 2e-004
gb|CB891199.1|CB891199 EST648168 KV3 Medicago truncatula cD... 50 2e-004
gb|CB894252.1|CB894252 EST647044 HOGA Medicago truncatula c... 48 9e-004
emb|CR498433.1| mth2-174F20RM1 BAC end, cultivar Jemalong A... 44 0.014
gb|AC142396.25| Medicago truncatula clone mth2-6g9, complet... 44 0.014
gb|AW559881.1|AW559881 EST314929 DSIR Medicago truncatula c... 42 0.054
gb|BG449351.1|BG449351 NF046F07IN1F1061 Insect herbivory Me... 42 0.054
>gb|AA660578.1|AA660578 00464 MtRHE Medicago truncatula cDNA 5' similar to
delta24-sterol-methyltransferase, mRNA sequence
Length = 576
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| ||||| ||||| |||| |||||| | |||||||
Sbjct: 21 gaaggttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcag 80
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 81 ctcgacatc 89
>gb|AA660590.1|AA660590 00476 MtRHE Medicago truncatula cDNA 5' similar to
delta24-sterol-methyltransferase, mRNA sequence
Length = 555
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| ||||| ||||| |||| |||||| | |||||||
Sbjct: 21 gaaggttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcag 80
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 81 ctcgacatc 89
>gb|BE322931.1|BE322931 NF025A06IN1F1038 Insect herbivory Medicago truncatula cDNA clone
NF025A06IN 5', mRNA sequence
Length = 660
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| ||||| ||||| |||| |||||| | |||||||
Sbjct: 340 gaaggttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcag 399
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 400 ctcgacatc 408
>gb|BF648256.1|BF648256 NF045H03EC1F1031 Elicited cell culture Medicago truncatula cDNA
clone NF045H03EC 5', mRNA sequence
Length = 635
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| ||||| ||||| |||| |||||| | |||||||
Sbjct: 367 gaaggttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcag 426
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 427 ctcgacatc 435
>gb|BI271778.1|BI271778 NF019A05FL1F1036 Developing flower Medicago truncatula cDNA clone
NF019A05FL 5', mRNA sequence
Length = 691
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| ||||| ||||| |||| |||||| | |||||||
Sbjct: 385 gaaggttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcag 444
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 445 ctcgacatc 453
>gb|BQ164947.1|BQ164947 EST610816 KVKC Medicago truncatula cDNA clone pKVKC-3H9, mRNA
sequence
Length = 788
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| ||||| ||||| |||| |||||| | |||||||
Sbjct: 438 gaaggttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcag 497
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 498 ctcgacatc 506
>gb|CB891199.1|CB891199 EST648168 KV3 Medicago truncatula cDNA clone KV3-49B3, mRNA
sequence
Length = 624
Score = 50.1 bits (25), Expect = 2e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| ||||| ||||| |||| |||||| | |||||||
Sbjct: 271 gaaggttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcag 330
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 331 ctcgacatc 339
>gb|CB894252.1|CB894252 EST647044 HOGA Medicago truncatula cDNA clone HOGA-30H7, mRNA
sequence
Length = 792
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaat 381
||||||||||||||| || ||||| ||||| ||||| |||| ||||||
Sbjct: 315 gaaggttttggatgttggttgtggtattggaggaccattaagagaaat 362
>emb|CR498433.1| mth2-174F20RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.014
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaat 381
||||||||||||| || ||||| ||||| ||||| |||| ||||||
Sbjct: 323 aggttttggatgttggttgtggtattggaggaccattaagagaaat 368
>gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete sequence
Length = 106058
Score = 44.1 bits (22), Expect = 0.014
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 336 aggttttggatgtgggatgtggaattgggggacctttaatagaaat 381
||||||||||||| || ||||| ||||| ||||| |||| ||||||
Sbjct: 54901 aggttttggatgttggttgtggtattggaggaccattaagagaaat 54946
>gb|AW559881.1|AW559881 EST314929 DSIR Medicago truncatula cDNA clone pDSIR-25B19, mRNA
sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.054
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| || ||||| |||| ||||| |||| |||||| | |||||||
Sbjct: 405 gaaggttttggatgttggttgtggtcttggaggaccattaagagaaatttcacgattcag 464
Query: 394 ctcaacatc 402
||| |||||
Sbjct: 465 ctcgacatc 473
>gb|BG449351.1|BG449351 NF046F07IN1F1061 Insect herbivory Medicago truncatula cDNA clone
NF046F07IN 5', mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.054
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 338 gttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcagctca 397
||||||||||| || ||||| ||||| ||||| |||| |||||| | ||||||||||
Sbjct: 1 gttttggatgttggttgtggtattggaggaccattaagagaaatttcacgattcagctcg 60
Query: 398 acatc 402
|||||
Sbjct: 61 acatc 65
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,607
Number of Sequences: 392609
Number of extensions: 133607
Number of successful extensions: 9783
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9762
Number of HSP's gapped (non-prelim): 21
length of query: 619
length of database: 441,732,993
effective HSP length: 19
effective length of query: 600
effective length of database: 434,273,422
effective search space: 260564053200
effective search space used: 260564053200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)