BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748394.2.2
(3527 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ137986.1|BQ137986 NF008A09PH1F1066 Phoma-infected Medi... 109 2e-021
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 66 2e-008
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 66 2e-008
emb|CR503946.1| mth2-181P20FM1 BAC end, cultivar Jemalong A... 54 8e-005
gb|AI974281.1|AI974281 T110283e KV0 Medicago truncatula cDN... 52 3e-004
gb|AW692487.2|AW692487 NF052A09ST1F1000 Developing stem Med... 52 3e-004
gb|AC144657.6| Medicago truncatula clone mth2-16a6, complet... 42 0.32
gb|AC144540.6| Medicago truncatula clone mth2-19p16, comple... 42 0.32
>gb|BQ137986.1|BQ137986 NF008A09PH1F1066 Phoma-infected Medicago truncatula cDNA clone
NF008A09PH 5', mRNA sequence
Length = 658
Score = 109 bits (55), Expect = 2e-021
Identities = 118/139 (84%)
Strand = Plus / Plus
Query: 1053 gccttacgtgatacatgggcactatgccgatgctggagatgttgctgctctcctttctgg 1112
|||||| ||||| ||||| |||||||| |||||||| || ||||||||| ||||| ||
Sbjct: 386 gccttatgtgattcatggacactatgctgatgctggtgacagtgctgctcttctttcagg 445
Query: 1113 tgcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaaca 1172
||| |||||||||||||||| |||||||| || |||||||| || ||||| || |||||
Sbjct: 446 tgctttgaatgtgccaatggttctcactggtcattcacttggaagaaacaaactagaaca 505
Query: 1173 actgctgaagcaagggcgc 1191
||| || ||||||||||||
Sbjct: 506 acttcttaagcaagggcgc 524
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 678 agaaaacatggaactaggtcgtgattctgatacaggtggccaggtgaaatatgtggtcga 737
|||||||||||| || ||| | ||||||||||| ||||| ||| | ||||||||||| ||
Sbjct: 1 agaaaacatggagcttggtagagattctgatactggtggacagattaaatatgtggtaga 60
Query: 738 acttgc 743
||||||
Sbjct: 61 acttgc 66
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 65.9 bits (33), Expect = 2e-008
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1300 attgatgagcagtggggattgtacgatggatttgatgtcaagcttgagaaagt 1352
||||| |||||||||||| | || |||||||| ||||||||||||||||||||
Sbjct: 115450 attgaggagcagtggggactttatgatggattcgatgtcaagcttgagaaagt 115398
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 65.9 bits (33), Expect = 2e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1300 attgatgagcagtggggattgtacgatggatttgatgtcaagcttgagaaagt 1352
||||| |||||||||||| | || |||||||| ||||||||||||||||||||
Sbjct: 58384 attgaggagcagtggggactttatgatggattcgatgtcaagcttgagaaagt 58436
Score = 46.1 bits (23), Expect = 0.020
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 676 ggagaaaacatggaactaggtcgtgattctgatacaggtggccaggt 722
|||||||||||||| || ||||| |||||||| || ||||| |||||
Sbjct: 57687 ggagaaaacatggagcttggtcgagattctgacaccggtggacaggt 57733
>emb|CR503946.1| mth2-181P20FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 510
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 1268 cagagcttgtaatcacgagcacaaggcaggagattgatgagcagtggggattgtacgatg 1327
|||| ||||| ||||| || ||||| || || |||||||| || |||||| | || ||||
Sbjct: 506 cagaacttgtcatcactagtacaagacaagaaattgatgaacaatggggactttatgatg 447
Query: 1328 gatttgatgtcaagcttga 1346
| |||||||||||||||||
Sbjct: 446 ggtttgatgtcaagcttga 428
>gb|AI974281.1|AI974281 T110283e KV0 Medicago truncatula cDNA clone pKV0-1N5, mRNA sequence
Length = 399
Score = 52.0 bits (26), Expect = 3e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1597 agaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtcca 1656
|||||||| || |||||||||||||| || | || ||||| |||||||| || |||||
Sbjct: 280 agaccagatcctaagaagaacatcacaactttggtgaaagcatttggagaatgccgtcct 339
Query: 1657 ctcagggaacttgcaaaccttactctgatcatgggtaacagagatg 1702
|| || || ||||| |||||||| | || ||||||||| ||||||
Sbjct: 340 cttagagagcttgctaaccttacattaattatgggtaaccgagatg 385
>gb|AW692487.2|AW692487 NF052A09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF052A09ST 5', mRNA sequence
Length = 603
Score = 52.0 bits (26), Expect = 3e-004
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1597 agaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtcca 1656
|||||||| || |||||||||||||| || | || ||||| |||||||| || |||||
Sbjct: 97 agaccagatcctaagaagaacatcacaactttggtgaaagcatttggagaatgccgtcct 156
Query: 1657 ctcagggaacttgcaaaccttactctgatcatgggtaacagagatg 1702
|| || || ||||| |||||||| | || ||||||||| ||||||
Sbjct: 157 cttagagagcttgctaaccttacattaattatgggtaaccgagatg 202
>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
Length = 92738
Score = 42.1 bits (21), Expect = 0.32
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 1597 agaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtcca 1656
|||||||| || |||||||||||||| || | || ||||| |||||||| || |||||
Sbjct: 53369 agaccagatcctaagaagaacatcacaactttggtgaaagcatttggagaatgccgtcct 53428
Query: 1657 ctcagggaacttgcaaacctt 1677
|| || || ||||| ||||||
Sbjct: 53429 cttagagagcttgctaacctt 53449
>gb|AC144540.6| Medicago truncatula clone mth2-19p16, complete sequence
Length = 78738
Score = 42.1 bits (21), Expect = 0.32
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1597 agaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtcca 1656
|||||||| || |||||||||||||| || | || ||||| |||||||| || |||||
Sbjct: 57473 agaccagatcctaagaagaacatcacaactttggtgaaagcatttggagaatgccgtcct 57414
Query: 1657 ctcagggaacttgcaaacctt 1677
|| || || ||||| ||||||
Sbjct: 57413 cttagagagcttgctaacctt 57393
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 827,853
Number of Sequences: 392609
Number of extensions: 827853
Number of successful extensions: 40549
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40486
Number of HSP's gapped (non-prelim): 63
length of query: 3527
length of database: 441,732,993
effective HSP length: 21
effective length of query: 3506
effective length of database: 433,488,204
effective search space: 1519809643224
effective search space used: 1519809643224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)