BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2... 42 0.091
gb|BG581975.1|BG581975 EST483712 GVN Medicago truncatula cD... 40 0.36
gb|BG645331.1|BG645331 EST506950 KV3 Medicago truncatula cD... 40 0.36
gb|BG645334.1|BG645334 EST506953 KV3 Medicago truncatula cD... 40 0.36
gb|BI311879.1|BI311879 EST5313629 GESD Medicago truncatula ... 40 0.36
gb|BM780176.1|BM780176 EST590764 KV2 Medicago truncatula cD... 40 0.36
gb|BQ165503.1|BQ165503 EST611372 KVKC Medicago truncatula c... 40 0.36
gb|CF068327.1|CF068327 EST669048 MTUS Medicago truncatula c... 40 0.36
gb|CF069544.1|CF069544 EST670265 MTUS Medicago truncatula c... 40 0.36
gb|CX516685.1|CX516685 s13dNF03E06VI051_390379 Virus-Infect... 40 0.36
gb|CX519794.1|CX519794 s13dNF52G07VI056_443640 Virus-Infect... 40 0.36
gb|CX521862.1|CX521862 s13dNF1FB07VI059_469528 Virus-Infect... 40 0.36
gb|CX522719.1|CX522719 s13dNF90D03VI030_471242 Virus-Infect... 40 0.36
gb|CX538850.1|CX538850 s13dNF0GB12GS093_460956 Germinating ... 40 0.36
>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
Length = 114811
Score = 42.1 bits (21), Expect = 0.091
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 519 tggcagcccatgtcccggaactggggccagaactggcagagcaactcgtacct 571
||||| |||||||| | || |||||||| |||||||||||||| || |||||
Sbjct: 47847 tggcaacccatgtcaagaaattggggccaaaactggcagagcaattcctacct 47899
>gb|BG581975.1|BG581975 EST483712 GVN Medicago truncatula cDNA clone pGVN-66I24 5' end,
mRNA sequence
Length = 798
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 667 ggaactgggggcagaactggcaaagcaa 694
>gb|BG645331.1|BG645331 EST506950 KV3 Medicago truncatula cDNA clone pKV3-39L24 5' end,
mRNA sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 441 ggaactgggggcagaactggcaaagcaa 414
>gb|BG645334.1|BG645334 EST506953 KV3 Medicago truncatula cDNA clone pKV3-39N8 5' end, mRNA
sequence
Length = 781
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 471 ggaactgggggcagaactggcaaagcaa 444
>gb|BI311879.1|BI311879 EST5313629 GESD Medicago truncatula cDNA clone pGESD15D8 5' end,
mRNA sequence
Length = 752
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 411 ggaactgggggcagaactggcaaagcaa 438
>gb|BM780176.1|BM780176 EST590764 KV2 Medicago truncatula cDNA clone pKV2-54C20, mRNA
sequence
Length = 770
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 682 ggaactgggggcagaactggcaaagcaa 709
>gb|BQ165503.1|BQ165503 EST611372 KVKC Medicago truncatula cDNA clone pKVKC-9F12, mRNA
sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 492 ggaactgggggcagaactggcaaagcaa 519
>gb|CF068327.1|CF068327 EST669048 MTUS Medicago truncatula cDNA clone MTUS-6F2, mRNA
sequence
Length = 784
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 626 ggaactgggggcagaactggcaaagcaa 653
>gb|CF069544.1|CF069544 EST670265 MTUS Medicago truncatula cDNA clone MTUS-21E11, mRNA
sequence
Length = 794
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 653 ggaactgggggcagaactggcaaagcaa 680
>gb|CX516685.1|CX516685 s13dNF03E06VI051_390379 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 545
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 447 ggaactgggggcagaactggcaaagcaa 474
>gb|CX519794.1|CX519794 s13dNF52G07VI056_443640 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 222 ggaactgggggcagaactggcaaagcaa 249
>gb|CX521862.1|CX521862 s13dNF1FB07VI059_469528 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 572
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 447 ggaactgggggcagaactggcaaagcaa 474
>gb|CX522719.1|CX522719 s13dNF90D03VI030_471242 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 447 ggaactgggggcagaactggcaaagcaa 474
>gb|CX538850.1|CX538850 s13dNF0GB12GS093_460956 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 432
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 535 ggaactggggccagaactggcagagcaa 562
|||||||||| ||||||||||| |||||
Sbjct: 255 ggaactgggggcagaactggcaaagcaa 282
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,423
Number of Sequences: 392609
Number of extensions: 110423
Number of successful extensions: 8277
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8259
Number of HSP's gapped (non-prelim): 18
length of query: 1022
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1002
effective length of database: 433,880,813
effective search space: 434748574626
effective search space used: 434748574626
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)