BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ148856.1|BQ148856 NF083B11FL1F1092 Developing flower M... 60 2e-007
gb|AJ499253.1|AJ499253 AJ499253 MTGIM Medicago truncatula c... 56 4e-006
gb|CG940431.1|CG940431 MBEDK82TRC mth2 Medicago truncatula ... 46 0.003
>gb|BQ148856.1|BQ148856 NF083B11FL1F1092 Developing flower Medicago truncatula cDNA clone
NF083B11FL 5', mRNA sequence
Length = 669
Score = 60.0 bits (30), Expect = 2e-007
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 384 ttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatacta 443
|||||||||||||| ||||| ||||||||||| | |||||| ||||| |||| | ||
Sbjct: 612 ttctcatggttgacattcattgcaagcatccaagctccaatggtaacatcctcattgctg 553
Query: 444 aacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataaa 503
||||| || |||||||| ||||| | ||| |||||||| | | || ||||| || | |
Sbjct: 552 aacatccgaaaactgttattcctaagagcgaccaagcttgatncaacatcagcagaaaga 493
Query: 504 gcataaattggcccatatgcatgaagaaa 532
||||| || || ||||| |||||||||||
Sbjct: 492 gcatatataggaccataagcatgaagaaa 464
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 561 ggctcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
|||||||||||||| | || |||||||| |||||||| ||||| |||||||||||
Sbjct: 435 ggctcataccatttgagtttcggatcagtgaaaacagggccctttttcatgcatcc 380
>gb|AJ499253.1|AJ499253 AJ499253 MTGIM Medicago truncatula cDNA clone mtgmacc120001h06,
mRNA sequence
Length = 473
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 384 ttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcct 435
|||||||||||||| ||||| ||||||||||| | |||||| ||||| ||||
Sbjct: 386 ttctcatggttgacattcattgcaagcatccaagctccaatggtaacatcct 437
>gb|CG940431.1|CG940431 MBEDK82TRC mth2 Medicago truncatula genomic clone 32N19, DNA
sequence
Length = 842
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 582 ggatcagtaaaaacaggccccttcttcatgcatcc 616
|||||||| |||||||| ||||| |||||||||||
Sbjct: 664 ggatcagtgaaaacagggccctttttcatgcatcc 698
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 143,266
Number of Sequences: 392609
Number of extensions: 143266
Number of successful extensions: 9298
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9291
Number of HSP's gapped (non-prelim): 7
length of query: 620
length of database: 441,732,993
effective HSP length: 19
effective length of query: 601
effective length of database: 434,273,422
effective search space: 260998326622
effective search space used: 260998326622
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)