BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW694036.1|AW694036 NF071H09ST1F1079 Developing stem Med... 119 2e-024
gb|BF635646.1|BF635646 NF104F06DT1F1057 Drought Medicago tr... 107 6e-021
gb|BF518788.1|BF518788 EST456243 DSIL Medicago truncatula c... 78 5e-012
gb|AC148218.7| Medicago truncatula clone mth2-21j14, WORKIN... 78 5e-012
gb|BF637353.1|BF637353 NF027D11PL1F1092 Phosphate starved l... 76 2e-011
gb|CX525915.1|CX525915 s13dNF32C08AT066_509574 Aphid-Infect... 76 2e-011
gb|BE998041.1|BE998041 EST429764 GVSN Medicago truncatula c... 66 2e-008
gb|AC135230.8| Medicago truncatula clone mth2-23e14, comple... 64 8e-008
gb|AC137829.23| Medicago truncatula clone mth2-34j5, comple... 64 8e-008
gb|CG974118.1|CG974118 MBEAK74TR mth2 Medicago truncatula g... 56 2e-005
emb|CR965510.1| mth4-5N17FM1 BAC end, cultivar Jemalong A17... 56 2e-005
gb|AW688630.1|AW688630 NF009G09ST1F1000 Developing stem Med... 50 0.001
gb|BF004888.1|BF004888 EST433449 DSLC Medicago truncatula c... 50 0.001
gb|CF068557.1|CF068557 EST669278 MTUS Medicago truncatula c... 50 0.001
gb|AC141106.9| Medicago truncatula clone mth2-33e18, comple... 50 0.001
gb|AC157758.4| Medicago truncatula clone mth2-62b13, comple... 50 0.001
gb|AC145470.17| Medicago truncatula clone mth2-6m8, WORKING... 50 0.001
gb|CG955293.1|CG955293 MBEIB90TR mth2 Medicago truncatula g... 48 0.005
gb|CG968888.1|CG968888 MBEGG88TF mth2 Medicago truncatula g... 48 0.005
emb|CR513203.1| mth4-42K7FM2 BAC end, cultivar Jemalong A17... 46 0.019
gb|BG648109.1|BG648109 EST509728 HOGA Medicago truncatula c... 46 0.019
gb|BQ123819.1|BQ123819 EST609395 GLSD Medicago truncatula c... 46 0.019
gb|BQ124314.1|BQ124314 EST609890 GLSD Medicago truncatula c... 46 0.019
gb|CA917552.1|CA917552 EST641699 GPOD Medicago truncatula c... 46 0.019
gb|AC144344.14| Medicago truncatula clone mth2-8c18, WORKIN... 46 0.019
gb|BI271118.1|BI271118 NF005C08FL1F1066 Developing flower M... 42 0.30
gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone m... 42 0.30
>gb|AW694036.1|AW694036 NF071H09ST1F1079 Developing stem Medicago truncatula cDNA clone
NF071H09ST 5', mRNA sequence
Length = 658
Score = 119 bits (60), Expect = 2e-024
Identities = 263/328 (80%), Gaps = 2/328 (0%)
Strand = Plus / Plus
Query: 1591 gctaccacacttgaacgtattgaaaagaattttgtcatcaccgacccgaggttaccagat 1650
||||| |||||||| |||||||| || || |||||||| || || || ||| | || ||
Sbjct: 57 gctactacacttgagcgtattgagaaaaactttgtcattactgatccaaggcttcctgac 116
Query: 1651 aatccaattatatttgcatcggatagcttttt-gcgtttgacagagtattgccgcgaaga 1709
||||| || ||||||||||| |||||||| || | | || ||||| ||| | || |||||
Sbjct: 117 aatcctataatatttgcatctgatagcttcttagagctt-acagaatatagtcgtgaaga 175
Query: 1710 aatattgggaagaaactgcaggtttcttcaaggacctgaaactgaccgtgggacagtaaa 1769
||||||||||||||| ||||||||||| |||||||| |||||||| | | || || |
Sbjct: 176 aatattgggaagaaattgcaggtttctgcaaggaccagaaactgatccagcaactgtgag 235
Query: 1770 gaagataagagatgccatagataaccaaacagaagttactgttcagctgataaattatac 1829
|| || ||||| || || || |||||||| |||||||| || || ||||| ||||||||
Sbjct: 236 aaaaattagagaggcaattgacaaccaaaccgaagttacagtgcaactgatcaattatac 295
Query: 1830 aaagagcggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaaggg 1889
|| || || || || || ||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 296 aaggactgggaaaaagttttggaatctgtttcacttgcaacctatgcgtgatcataaggg 355
Query: 1890 tgatgttcaatacttcattggggttcaa 1917
|| || || ||||| ||||| ||||||
Sbjct: 356 agaagtacagtactttattggtgttcaa 383
>gb|BF635646.1|BF635646 NF104F06DT1F1057 Drought Medicago truncatula cDNA clone NF104F06DT
5', mRNA sequence
Length = 464
Score = 107 bits (54), Expect = 6e-021
Identities = 102/118 (86%)
Strand = Plus / Plus
Query: 1810 gttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttgcag 1869
||||||||||| || |||||||| || || |||||||||||||| | |||||||||||
Sbjct: 257 gttcagctgatcaactatacaaaaagtggaaagaaattctggaatttgtttcacttgcaa 316
Query: 1870 cctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaattggatggaa 1927
||||||||||| || |||||||| |||||||||||||||| || ||||| |||||||
Sbjct: 317 cctatgcgtgaccaaaagggtgaacttcaatacttcattggtgtacaattagatggaa 374
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1705 gaagaaatattgggaagaaactgcaggtttcttcaaggacctgaaactgacc 1756
|||||||| ||||| ||||||| |||||||||||||||| ||||| ||||
Sbjct: 152 gaagaaattttgggtcgaaactgtcggtttcttcaaggaccagaaacagacc 203
>gb|BF518788.1|BF518788 EST456243 DSIL Medicago truncatula cDNA clone pDSIL-18M5, mRNA
sequence
Length = 266
Score = 77.8 bits (39), Expect = 5e-012
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 2231 aatactttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccata 2290
||||||| || ||||| |||||||||||| |||| ||||| || || || ||||| ||||
Sbjct: 74 aatacttcgcaatgaaggctatggataaaggtgttatgctcaatcgcaataaggtgcata 133
Query: 2291 gagctaccgctgaacgacaaatccttgatatgttggaccaccc 2333
||||| | ||||| || |||||||||| ||||||||||||||
Sbjct: 134 gagcttgcactgaaagataaatccttgacatgttggaccaccc 176
>gb|AC148218.7| Medicago truncatula clone mth2-21j14, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 58259
Score = 77.8 bits (39), Expect = 5e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 2686 atattttttgctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacat 2744
|||||| | |||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct: 41153 atatttatggctgaaccaatgagagcatcaaattcttttgttggcacagaagagtacat 41095
Score = 75.8 bits (38), Expect = 2e-011
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 2802 aggaattcttctatatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
|||||||||||||||||| ||| | ||||| |||||||| ||||| || || | || ||
Sbjct: 40582 aggaattcttctatatgaaatgatttatggatatacaccattcaggggaaagaataggca 40523
Query: 2862 aaggacatttgctaatattctgcacaaggatatcagatttcc 2903
||| |||||||| |||||||| ||||||||| | ||||||||
Sbjct: 40522 aagaacatttgcaaatattctccacaaggatcttagatttcc 40481
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 2309 aaatccttgatatgttggaccacccattccttccgacattgtatgcatcatttcag 2364
|||||||||| |||||||||||||| || ||||| |||| ||||| || ||||||
Sbjct: 42077 aaatccttgacatgttggaccacccttttcttcctgcattatatgcttcctttcag 42022
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 2768 ctggccatacgagtgctgtagattggtgggc 2798
|||||||||| |||||||| |||||||||||
Sbjct: 40921 ctggccatactagtgctgtggattggtgggc 40891
Score = 44.1 bits (22), Expect = 0.076
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1591 gctaccacacttgaacgtattgaaaagaattttgtcat 1628
||||| |||||||||||||| || ||||| ||||||||
Sbjct: 9075 gctactacacttgaacgtatcgagaagaactttgtcat 9112
>gb|BF637353.1|BF637353 NF027D11PL1F1092 Phosphate starved leaf Medicago truncatula cDNA
clone NF027D11PL 5', mRNA sequence
Length = 672
Score = 75.8 bits (38), Expect = 2e-011
Identities = 119/146 (81%)
Strand = Plus / Plus
Query: 2231 aatactttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccata 2290
||||||| || ||||| ||||||||||| |||| ||||| || || || ||||| ||||
Sbjct: 214 aatacttcgcaatgaaggctatggataagggtgttatgctcaatcgcaataaggtgcata 273
Query: 2291 gagctaccgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgt 2350
||||| | ||||| || |||||||||| |||||||||||||| || || || |||| |
Sbjct: 274 gagcttgcactgaaagagaaatccttgacatgttggaccacccttttctgcctgcattat 333
Query: 2351 atgcatcatttcagacaaagacacat 2376
|||| || |||||||| || ||||||
Sbjct: 334 atgcttcctttcagaccaaaacacat 359
>gb|CX525915.1|CX525915 s13dNF32C08AT066_509574 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 612
Score = 75.8 bits (38), Expect = 2e-011
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 2231 aatactttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccata 2290
||||||| || ||||| ||||||||||| |||| ||||| || || || ||||| ||||
Sbjct: 416 aatacttcgcaatgaaggctatggataagggtgttatgctcaatcgcaataaggtgcata 357
Query: 2291 gagctaccgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgt 2350
||||| | ||||| || |||||||||| |||||||||||||| || || || |||| |
Sbjct: 356 gagcttgcactgaaagagaaatccttgacatgttggaccacccttttctgcctgcattat 297
Query: 2351 atgcatcatttcagacaaagacacat 2376
|||| || |||||||| || ||||||
Sbjct: 296 atgcttcctttcagaccaaaacacat 271
>gb|BE998041.1|BE998041 EST429764 GVSN Medicago truncatula cDNA clone pGVSN-8L15, mRNA
sequence
Length = 662
Score = 65.9 bits (33), Expect = 2e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 1591 gctaccacacttgaacgtattgaaaagaattttgtcatcaccgacccgaggttaccagat 1650
||||| |||||||||||||| || ||||| |||||||| || || || ||| | ||||||
Sbjct: 532 gctactacacttgaacgtatcgagaagaactttgtcattactgatcctaggctcccagat 591
Query: 1651 aatccaattatatttgcatcggatagctt 1679
|| || ||||| |||||||| ||||||||
Sbjct: 592 aaccccattatctttgcatctgatagctt 620
>gb|AC135230.8| Medicago truncatula clone mth2-23e14, complete sequence
Length = 124972
Score = 63.9 bits (32), Expect = 8e-008
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 2801 taggaattcttctatatgagatgttatatggttatacacccttcagagggaaaacaagac 2860
|||| |||||||||||||| ||| | ||||| || ||||| ||||| || || |||||||
Sbjct: 112370 taggtattcttctatatgaaatgctttatggatacacaccattcaggggaaagacaagac 112429
Query: 2861 aaaggacatttgctaatattctgcacaa 2888
||| ||||||||| || ||||| |||||
Sbjct: 112430 aaaagacatttgcaaacattcttcacaa 112457
Score = 61.9 bits (31), Expect = 3e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 2698 gaaccaatgcgagcatcaaattcttttgttggtacagaggagtacat 2744
||||||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 111570 gaaccaatgagagcgtccaattcttttgttggtacagaagagtacat 111616
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 2282 aggtccatagagctaccgctgaacgacaaatccttgatatgttggaccaccc 2333
|||| ||||||||| | ||||| || |||||||||| ||||||||||||||
Sbjct: 110300 aggtgcatagagcttgcactgaaagagaaatccttgacatgttggaccaccc 110351
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1849 tggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| || ||||||||||| |||||||||||||| ||||
Sbjct: 109024 tggaatctgtttcacttgcaacctatgcgtgatcataagg 109063
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1705 gaagaaatattgggaagaaactgcaggt 1732
|||||||||||||||||||| |||||||
Sbjct: 108308 gaagaaatattgggaagaaattgcaggt 108335
Score = 46.1 bits (23), Expect = 0.019
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 1003 tacaagaaggatggcacaccattctggaacctcctaaccgttgcccccataaaggatgag 1062
|||||||||||||| || || |||||||| || || || || | ||||| ||||||||
Sbjct: 102667 tacaagaaggatggaactcccttctggaatcttctcactatttcacccatcaaggatgat 102726
Query: 1063 gatggcagggtcctcaagttcattggg 1089
||||||| || |||||||| ||||||
Sbjct: 102727 gatggcaatgtgctcaagttaattggg 102753
>gb|AC137829.23| Medicago truncatula clone mth2-34j5, complete sequence
Length = 127295
Score = 63.9 bits (32), Expect = 8e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 2801 taggaattcttctatatgagatgttatatggttatacacccttcagagggaaaacaagac 2860
|||| |||||||||||||| ||| | ||||| || ||||| ||||| || || |||||||
Sbjct: 14110 taggtattcttctatatgaaatgctttatggatacacaccattcaggggaaagacaagac 14051
Query: 2861 aaaggacatttgctaatattctgcacaa 2888
||| ||||||||| || ||||| |||||
Sbjct: 14050 aaaagacatttgcaaacattcttcacaa 14023
Score = 61.9 bits (31), Expect = 3e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 2698 gaaccaatgcgagcatcaaattcttttgttggtacagaggagtacat 2744
||||||||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 14910 gaaccaatgagagcgtccaattcttttgttggtacagaagagtacat 14864
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1705 gaagaaatattgggaagaaactgcaggt 1732
|||||||||||||||||||| |||||||
Sbjct: 18172 gaagaaatattgggaagaaattgcaggt 18145
Score = 48.1 bits (24), Expect = 0.005
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1849 tggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| || ||||||||||| |||||||||||||| ||||
Sbjct: 17456 tggaatctgtttcacttgcaacctatgcgtgatcataagg 17417
Score = 48.1 bits (24), Expect = 0.005
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 2282 aggtccatagagctaccgctgaacgacaaatccttgatatgttggaccaccc 2333
|||| ||||||||| | ||||| || |||||||||| ||||||||||||||
Sbjct: 16180 aggtgcatagagcttgcactgaaagagaaatccttgacatgttggaccaccc 16129
Score = 46.1 bits (23), Expect = 0.019
Identities = 71/87 (81%)
Strand = Plus / Minus
Query: 1003 tacaagaaggatggcacaccattctggaacctcctaaccgttgcccccataaaggatgag 1062
|||||||||||||| || || |||||||| || || || || | ||||| ||||||||
Sbjct: 23813 tacaagaaggatggaactcccttctggaatcttctcactatttcacccatcaaggatgat 23754
Query: 1063 gatggcagggtcctcaagttcattggg 1089
||||||| || |||||||| ||||||
Sbjct: 23753 gatggcaatgtgctcaagttaattggg 23727
>gb|CG974118.1|CG974118 MBEAK74TR mth2 Medicago truncatula genomic clone 13N3, DNA sequence
Length = 795
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1837 ggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| || ||||||||||| || || |||||||| ||||||||||||||||
Sbjct: 600 ggtaaaaagttctggaacctgttccatttgcagccaatgcgtgatcagaagg 549
>emb|CR965510.1| mth4-5N17FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 778
Score = 56.0 bits (28), Expect = 2e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 1837 ggtaagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| || ||||||||||| || || |||||||| ||||||||||||||||
Sbjct: 605 ggtaaaaagttctggaacctgttccatttgcagccaatgcgtgatcagaagg 554
>gb|AW688630.1|AW688630 NF009G09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF009G09ST 5', mRNA sequence
Length = 684
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1732 tttcttcaaggacctgaaactgacc 1756
|||||||||||||||||||||||||
Sbjct: 639 tttcttcaaggacctgaaactgacc 663
>gb|BF004888.1|BF004888 EST433449 DSLC Medicago truncatula cDNA clone pDSLC-28B8, mRNA
sequence
Length = 649
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1732 tttcttcaaggacctgaaactgacc 1756
|||||||||||||||||||||||||
Sbjct: 612 tttcttcaaggacctgaaactgacc 636
>gb|CF068557.1|CF068557 EST669278 MTUS Medicago truncatula cDNA clone MTUS-9E4, mRNA sequence
Length = 788
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1732 tttcttcaaggacctgaaactgacc 1756
|||||||||||||||||||||||||
Sbjct: 613 tttcttcaaggacctgaaactgacc 637
>gb|AC141106.9| Medicago truncatula clone mth2-33e18, complete sequence
Length = 105951
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagcagcagcag 325
||||||||||| |||||||||||||||||
Sbjct: 19545 aggaggaggaggaggaggagcagcagcag 19517
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagcag 328
|||||||||| |||||||| |||||||||||
Sbjct: 19547 ggaggaggaggaggaggaggagcagcagcag 19517
>gb|AC157758.4| Medicago truncatula clone mth2-62b13, complete sequence
Length = 106286
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 297 aggaggaggagaaggaggagcagcagcag 325
||||||||||| |||||||||||||||||
Sbjct: 87713 aggaggaggaggaggaggagcagcagcag 87685
Score = 46.1 bits (23), Expect = 0.019
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 298 ggaggaggagaaggaggagcagcagcagcag 328
|||||||||| |||||||| |||||||||||
Sbjct: 87715 ggaggaggaggaggaggaggagcagcagcag 87685
>gb|AC145470.17| Medicago truncatula clone mth2-6m8, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 110725
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1840 aagaaattctggaacctctttcacttgcagcctatgcgtga 1880
|||||||||||||| | ||||||||||| |||||||||||
Sbjct: 45864 aagaaattctggaatttgtttcacttgcaacctatgcgtga 45904
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1732 tttcttcaaggacctgaaactgacc 1756
|||||||||||||||||||||||||
Sbjct: 43095 tttcttcaaggacctgaaactgacc 43119
Score = 44.1 bits (22), Expect = 0.076
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1886 agggtgatgttcaatacttcattggggttcaattggatggaa 1927
||||||| |||||||||||||||| || ||||| |||||||
Sbjct: 46022 agggtgaacttcaatacttcattggtgtacaattagatggaa 46063
>gb|CG955293.1|CG955293 MBEIB90TR mth2 Medicago truncatula genomic clone 60O12, DNA sequence
Length = 907
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1705 gaagaaatattgggaagaaactgcaggt 1732
|||||||||||||||||||| |||||||
Sbjct: 316 gaagaaatattgggaagaaattgcaggt 343
>gb|CG968888.1|CG968888 MBEGG88TF mth2 Medicago truncatula genomic clone 49P7, DNA sequence
Length = 885
Score = 48.1 bits (24), Expect = 0.005
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1705 gaagaaatattgggaagaaactgcaggt 1732
|||||||||||||||||||| |||||||
Sbjct: 321 gaagaaatattgggaagaaattgcaggt 348
>emb|CR513203.1| mth4-42K7FM2 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 656
Score = 46.1 bits (23), Expect = 0.019
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||| |||||||||||||||||||||
Sbjct: 562 aggaggaggaggagcagcagcagcagc 588
>gb|BG648109.1|BG648109 EST509728 HOGA Medicago truncatula cDNA clone pHOGA-18J2 5' end,
mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.019
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||| |||||||||||||||||||||
Sbjct: 665 aggaggaggaggagcagcagcagcagc 639
>gb|BQ123819.1|BQ123819 EST609395 GLSD Medicago truncatula cDNA clone pGLSD-33B23, mRNA
sequence
Length = 752
Score = 46.1 bits (23), Expect = 0.019
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||| |||||||||||||||||||||
Sbjct: 327 aggaggaggaggagcagcagcagcagc 301
>gb|BQ124314.1|BQ124314 EST609890 GLSD Medicago truncatula cDNA clone pGLSD-34P20, mRNA
sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.019
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||| |||||||||||||||||||||
Sbjct: 330 aggaggaggaggagcagcagcagcagc 304
>gb|CA917552.1|CA917552 EST641699 GPOD Medicago truncatula cDNA clone GPOD-36F7, mRNA
sequence
Length = 513
Score = 46.1 bits (23), Expect = 0.019
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||| |||||||||||||||||||||
Sbjct: 401 aggaggaggaggagcagcagcagcagc 375
>gb|AC144344.14| Medicago truncatula clone mth2-8c18, WORKING DRAFT SEQUENCE, 12
unordered pieces
Length = 83825
Score = 46.1 bits (23), Expect = 0.019
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 303 aggagaaggaggagcagcagcagcagc 329
||||| |||||||||||||||||||||
Sbjct: 46913 aggaggaggaggagcagcagcagcagc 46887
>gb|BI271118.1|BI271118 NF005C08FL1F1066 Developing flower Medicago truncatula cDNA clone
NF005C08FL 5', mRNA sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 309 aggaggagcagcagcagcagc 329
|||||||||||||||||||||
Sbjct: 443 aggaggagcagcagcagcagc 423
>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete
sequence
Length = 132817
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2651 agaagaaaaagaggaggaaga 2671
|||||||||||||||||||||
Sbjct: 54955 agaagaaaaagaggaggaaga 54935
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 801,375
Number of Sequences: 392609
Number of extensions: 801375
Number of successful extensions: 65524
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65302
Number of HSP's gapped (non-prelim): 208
length of query: 3330
length of database: 441,732,993
effective HSP length: 21
effective length of query: 3309
effective length of database: 433,488,204
effective search space: 1434412467036
effective search space used: 1434412467036
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)