BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3561840.2.1
(1168 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI311053.1|BI311053 EST5312803 GESD Medicago truncatula ... 46 0.007
gb|CA857928.1|CA857928 EST635183 GLSD Medicago truncatula c... 46 0.007
gb|CX539289.1|CX539289 s13dNF64C07GS050_461838 Germinating ... 46 0.007
gb|AC137837.3| Medicago truncatula clone mth2-30e7, complet... 44 0.026
gb|AC140105.5| Medicago truncatula clone mth2-5d16, WORKING... 44 0.026
gb|AC153460.18| Medicago truncatula clone mth2-76i7, WORKIN... 44 0.026
gb|AC142223.10| Medicago truncatula clone mth2-5e21, comple... 40 0.41
gb|AC119417.17| Medicago truncatula clone mth1-6m23, comple... 40 0.41
>gb|BI311053.1|BI311053 EST5312803 GESD Medicago truncatula cDNA clone pGESD9F6 5' end,
mRNA sequence
Length = 754
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 380 cagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaacactaacaggcac 439
||||||||||| ||||| ||| | | || || |||||||||||||| |||||||||||
Sbjct: 295 cagcaagaatctgcaaagctgagacaacaaatacagatgctgcaaaattctaacaggcac 354
Query: 440 ttg 442
|||
Sbjct: 355 ttg 357
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaa 141
||||||||||||| ||||||||| || ||||| |||||
Sbjct: 25 atggggaggggaaagattgagataaaaaggattgagaa 62
>gb|CA857928.1|CA857928 EST635183 GLSD Medicago truncatula cDNA clone pGLSD-26B15, mRNA
sequence
Length = 858
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 380 cagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaacactaacaggcac 439
||||||||||| ||||| ||| | | || || |||||||||||||| |||||||||||
Sbjct: 300 cagcaagaatctgcaaagctgagacaacaaatacagatgctgcaaaattctaacaggcac 359
Query: 440 ttg 442
|||
Sbjct: 360 ttg 362
>gb|CX539289.1|CX539289 s13dNF64C07GS050_461838 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 380 cagcaagaatccgcaaaactgcgcaaccagatccagatgctgcaaaacactaacaggcac 439
||||||||||| ||||| ||| | | || || |||||||||||||| |||||||||||
Sbjct: 333 cagcaagaatctgcaaagctgagacaacaaatacagatgctgcaaaattctaacaggcac 392
Query: 440 ttg 442
|||
Sbjct: 393 ttg 395
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaa 141
||||||||||||| ||||||||| || ||||| |||||
Sbjct: 63 atggggaggggaaagattgagataaaaaggattgagaa 100
>gb|AC137837.3| Medicago truncatula clone mth2-30e7, complete sequence
Length = 79015
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 118 gattgagatcaagaggatcgagaaca 143
|||||||||||||||||| |||||||
Sbjct: 37580 gattgagatcaagaggattgagaaca 37555
>gb|AC140105.5| Medicago truncatula clone mth2-5d16, WORKING DRAFT SEQUENCE, 18
unordered pieces
Length = 82710
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 104 atggggaggggaaggattgagatcaagaggatcgagaa 141
||||||||||||| ||||||||| || ||||| |||||
Sbjct: 10105 atggggaggggaaagattgagataaaaaggattgagaa 10068
>gb|AC153460.18| Medicago truncatula clone mth2-76i7, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 127968
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 118 gattgagatcaagaggatcgagaaca 143
|||||||||||||||||| |||||||
Sbjct: 82367 gattgagatcaagaggattgagaaca 82392
>gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete sequence
Length = 122763
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1095 atcaggacatcatgtttgtt 1114
||||||||||||||||||||
Sbjct: 69133 atcaggacatcatgtttgtt 69152
>gb|AC119417.17| Medicago truncatula clone mth1-6m23, complete sequence
Length = 110254
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1095 atcaggacatcatgtttgtt 1114
||||||||||||||||||||
Sbjct: 50007 atcaggacatcatgtttgtt 49988
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,213
Number of Sequences: 392609
Number of extensions: 217213
Number of successful extensions: 16569
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16532
Number of HSP's gapped (non-prelim): 34
length of query: 1168
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1148
effective length of database: 433,880,813
effective search space: 498095173324
effective search space used: 498095173324
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)