BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3478999.2.1
(825 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ152982.1|BQ152982 NF027D07IR1F1062 Irradiated Medicago... 224 9e-057
gb|CX525240.1|CX525240 s13dNF16A09AT069_479114 Aphid-Infect... 224 9e-057
gb|CX525262.1|CX525262 s13dNF16C09AT070_479158 Aphid-Infect... 224 9e-057
gb|AW574009.1|AW574009 EST316600 GVN Medicago truncatula cD... 202 3e-050
gb|AA660332.1|AA660332 00203 MtRHE Medicago truncatula cDNA... 194 8e-048
gb|AJ504176.1|AJ504176 AJ504176 MTAMP Medicago truncatula c... 131 1e-028
gb|AL387802.1|AL387802 MtBC44G07R1 MtBC Medicago truncatula... 76 5e-012
gb|CX529542.1|CX529542 s13dNF97E03MJ019_245135 Methyl Jasmo... 76 5e-012
gb|BG582270.1|BG582270 EST484010 GVN Medicago truncatula cD... 74 2e-011
gb|AL387801.1|AL387801 MtBC44G07F1 MtBC Medicago truncatula... 50 3e-004
gb|CG928443.1|CG928443 MBENA23TF mth2 Medicago truncatula g... 40 0.29
gb|AW329631.2|AW329631 N200891e rootphos(-) Medicago trunca... 40 0.29
gb|AW776686.1|AW776686 EST335751 DSIL Medicago truncatula c... 40 0.29
gb|AW208309.2|AW208309 M110974e GVSN Medicago truncatula cD... 40 0.29
gb|BE123948.1|BE123948 EST394073 DSIL Medicago truncatula c... 40 0.29
gb|BE124362.1|BE124362 EST393397 GVN Medicago truncatula cD... 40 0.29
gb|BE240699.1|BE240699 EST404748 MHRP- Medicago truncatula ... 40 0.29
gb|AL371403.1|AL371403 MtBA44A04F1 MtBA Medicago truncatula... 40 0.29
gb|AL371404.1|AL371404 MtBA44A04R1 MtBA Medicago truncatula... 40 0.29
gb|AL376322.1|AL376322 MtBB22H06F1 MtBB Medicago truncatula... 40 0.29
gb|AL376323.1|AL376323 MtBB22H06R1 MtBB Medicago truncatula... 40 0.29
gb|AL379833.1|AL379833 MtBB47G01R1 MtBB Medicago truncatula... 40 0.29
gb|AL382383.1|AL382383 MtBC06E02F1 MtBC Medicago truncatula... 40 0.29
gb|AL382384.1|AL382384 MtBC06E02R1 MtBC Medicago truncatula... 40 0.29
gb|AL383424.1|AL383424 MtBC14A11R1 MtBC Medicago truncatula... 40 0.29
gb|AL383574.1|AL383574 MtBC15C04F1 MtBC Medicago truncatula... 40 0.29
gb|AL386241.1|AL386241 MtBC33D11F1 MtBC Medicago truncatula... 40 0.29
gb|AL386242.1|AL386242 MtBC33D11R1 MtBC Medicago truncatula... 40 0.29
gb|BE941595.1|BE941595 EST421174 MGHG Medicago truncatula c... 40 0.29
gb|BE941596.1|BE941596 EST421175 MGHG Medicago truncatula c... 40 0.29
gb|BF519479.1|BF519479 EST456942 DSIL Medicago truncatula c... 40 0.29
gb|BF519545.1|BF519545 EST457009 DSIL Medicago truncatula c... 40 0.29
gb|BF520665.1|BF520665 EST458138 DSIL Medicago truncatula c... 40 0.29
gb|BF520982.1|BF520982 EST458446 DSIL Medicago truncatula c... 40 0.29
gb|BF638139.1|BF638139 NF044C12PL1F1088 Phosphate starved l... 40 0.29
gb|BF645087.1|BF645087 NF034E07EC1F1054 Elicited cell cultu... 40 0.29
gb|BF649734.1|BF649734 NF084B11EC1F1091 Elicited cell cultu... 40 0.29
gb|BF651108.1|BF651108 NF101B11EC1F1091 Elicited cell cultu... 40 0.29
gb|BG455559.1|BG455559 NF065E04PL1F1033 Phosphate starved l... 40 0.29
gb|BG456226.1|BG456226 NF076F07PL1F1061 Phosphate starved l... 40 0.29
gb|BG580106.1|BG580106 EST481828 GVN Medicago truncatula cD... 40 0.29
gb|BG582232.1|BG582232 EST483972 GVN Medicago truncatula cD... 40 0.29
gb|BG583003.1|BG583003 EST484742 GVN Medicago truncatula cD... 40 0.29
gb|BG647480.1|BG647480 EST509099 HOGA Medicago truncatula c... 40 0.29
gb|BI272707.1|BI272707 NF027A11FL1F1084 Developing flower M... 40 0.29
gb|BQ153458.1|BQ153458 NF037A10IR1F1071 Irradiated Medicago... 40 0.29
gb|BQ255351.1|BQ255351 MTNAG84TKN KVKC Medicago truncatula ... 40 0.29
gb|AJ497330.1|AJ497330 AJ497330 MTFLOW Medicago truncatula ... 40 0.29
gb|AJ497383.1|AJ497383 AJ497383 MTFLOW Medicago truncatula ... 40 0.29
gb|AJ497838.1|AJ497838 AJ497838 MTFLOW Medicago truncatula ... 40 0.29
gb|CX520710.1|CX520710 s13dNF62B04VI029_449206 Virus-Infect... 40 0.29
gb|CX521892.1|CX521892 s13dNF1FE04VI024_469588 Virus-Infect... 40 0.29
gb|CX522365.1|CX522365 s13dNF78G11VI086_470534 Virus-Infect... 40 0.29
gb|CX528549.1|CX528549 s13dNF55E12AT099_517610 Aphid-Infect... 40 0.29
gb|CX530460.1|CX530460 s13dNF41D02MJ015_246951 Methyl Jasmo... 40 0.29
gb|CX531766.1|CX531766 s13dNF87B08MJ061_257474 Methyl Jasmo... 40 0.29
gb|CX532229.1|CX532229 s13dNF65H04MJ032_270754 Methyl Jasmo... 40 0.29
gb|AC158501.3| Medicago truncatula chromosome 2 BAC clone m... 40 0.29
>gb|BQ152982.1|BQ152982 NF027D07IR1F1062 Irradiated Medicago truncatula cDNA clone
NF027D07IR 5', mRNA sequence
Length = 661
Score = 224 bits (113), Expect = 9e-057
Identities = 356/437 (81%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||| ||||| ||||| || || ||||||||||||| || ||||| | ||||| ||
Sbjct: 91 atggctaacagtaaccttcctcgaagaatcatcaaggaaacacagcgtttgctcagtgag 150
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
|||||||| || ||||| || || || || ||||| || |||||||| |||||||| |||
Sbjct: 151 ccagcgcctggaattagtgcatccccttccgaagacaatatgcggtatttcaatgtgatg 210
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| | ||||| || |||||||| |||||||||||||| || ||||| |||
Sbjct: 211 atccttggcccaactcagtctccttatgaagggggagttttcaagctagaactatttttg 270
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
||||| ||||||||||||||||| || || |||||||| | || ||||| || |||||
Sbjct: 271 cctgaagaatatccaatggctgctccaaaggttaggttcttgacaaaaatatatcatcct 330
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||| |||||||| || || ||||| || || || |||||||| ||
Sbjct: 331 aacattgacaagcttggcaggatatgtcttgatattctgaaagataagtggagtcctgcc 390
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|| ||||| || || || || | || ||||| || ||| ||||||| ||||| ||||||
Sbjct: 391 ctccagattcgcactgtacttttgagtattcaagctcttttgagtgcaccaaacccagat 450
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|||||||| || || |||||||| || || |||||||| || || ||||| ||| |||||
Sbjct: 451 gatcctctttctgagaacattgctaagcattggaaatctaacgaggctgaggctgttgag 510
Query: 475 acagcgaaggagtggac 491
||||| || ||||||||
Sbjct: 511 acagccaaagagtggac 527
>gb|CX525240.1|CX525240 s13dNF16A09AT069_479114 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 549
Score = 224 bits (113), Expect = 9e-057
Identities = 356/437 (81%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||| ||||| ||||| || || ||||||||||||| || ||||| | ||||| ||
Sbjct: 87 atggctaacagtaaccttcctcgaagaatcatcaaggaaacacagcgtttgctcagtgag 146
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
|||||||| || ||||| || || || || ||||| || |||||||| |||||||| |||
Sbjct: 147 ccagcgcctggaattagtgcatccccttccgaagacaatatgcggtatttcaatgtgatg 206
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| | ||||| || |||||||| |||||||||||||| || ||||| |||
Sbjct: 207 atccttggcccaactcagtctccttatgaagggggagttttcaagctagaactatttttg 266
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
||||| ||||||||||||||||| || || |||||||| | || ||||| || |||||
Sbjct: 267 cctgaagaatatccaatggctgctccaaaggttaggttcttgacaaaaatatatcatcct 326
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||| |||||||| || || ||||| || || || |||||||| ||
Sbjct: 327 aacattgacaagcttggcaggatatgtcttgatattctgaaagataagtggagtcctgcc 386
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|| ||||| || || || || | || ||||| || ||| ||||||| ||||| ||||||
Sbjct: 387 ctccagattcgcactgtacttttgagtattcaagctcttttgagtgcaccaaacccagat 446
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|||||||| || || |||||||| || || |||||||| || || ||||| ||| |||||
Sbjct: 447 gatcctctttctgagaacattgctaagcattggaaatctaacgaggctgaggctgttgag 506
Query: 475 acagcgaaggagtggac 491
||||| || ||||||||
Sbjct: 507 acagccaaagagtggac 523
>gb|CX525262.1|CX525262 s13dNF16C09AT070_479158 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 549
Score = 224 bits (113), Expect = 9e-057
Identities = 356/437 (81%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||| ||||| ||||| || || ||||||||||||| || ||||| | ||||| ||
Sbjct: 87 atggctaacagtaaccttcctcgaagaatcatcaaggaaacacagcgtttgctcagtgag 146
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
|||||||| || ||||| || || || || ||||| || |||||||| |||||||| |||
Sbjct: 147 ccagcgcctggaattagtgcatccccttccgaagacaatatgcggtatttcaatgtgatg 206
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| | ||||| || |||||||| |||||||||||||| || ||||| |||
Sbjct: 207 atccttggcccaactcagtctccttatgaagggggagttttcaagctagaactatttttg 266
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
||||| ||||||||||||||||| || || |||||||| | || ||||| || |||||
Sbjct: 267 cctgaagaatatccaatggctgctccaaaggttaggttcttgacaaaaatatatcatcct 326
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||| |||||||| || || ||||| || || || |||||||| ||
Sbjct: 327 aacattgacaagcttggcaggatatgtcttgatattctgaaagataagtggagtcctgcc 386
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|| ||||| || || || || | || ||||| || ||| ||||||| ||||| ||||||
Sbjct: 387 ctccagattcgcactgtacttttgagtattcaagctcttttgagtgcaccaaacccagat 446
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
|||||||| || || |||||||| || || |||||||| || || ||||| ||| |||||
Sbjct: 447 gatcctctttctgagaacattgctaagcattggaaatctaacgaggctgaggctgttgag 506
Query: 475 acagcgaaggagtggac 491
||||| || ||||||||
Sbjct: 507 acagccaaagagtggac 523
>gb|AW574009.1|AW574009 EST316600 GVN Medicago truncatula cDNA clone pGVN-50H8, mRNA
sequence
Length = 515
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Plus
Query: 142 tcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccctat 201
|||||||| || |||||||| |||||||| |||||||||||||| | ||||| || |||
Sbjct: 2 tcggaagacaatatgcggtatttcaatgtgatgatccttggcccaactcagtctccttat 61
Query: 202 gaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccg 261
||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||
Sbjct: 62 gaagggggagttttcaagctagaactatttttgcctgaagaatatccaatggctgctcca 121
Query: 262 aaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgc 321
|| |||||||| | || ||||| || ||||| ||||||||||||||||| ||||||||
Sbjct: 122 aaggttaggttcttgacaaaaatatatcatcctaacattgacaagcttggcaggatatgt 181
Query: 322 ctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagc 381
|| || ||||| || || || |||| ||| || || ||||| || || || || | ||
Sbjct: 182 cttgatattctgaaagataagtggactcctgccctccagattcgcactgtacttttgagt 241
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
||||| || ||| ||||||| ||||| |||||||||||||| || || |||||||| ||
Sbjct: 242 attcaagctcttttgagtgcaccaaacccagatgatcctctttctgagaacattgctaag 301
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacagc 479
|| |||||||| ||||| ||||| ||| ||||||||||
Sbjct: 302 cattggaaatctaatgaggctgaggctgttgagacagc 339
>gb|AA660332.1|AA660332 00203 MtRHE Medicago truncatula cDNA 5' similar to ubiquitin
conjugating enzyme E2, mRNA sequence
Length = 541
Score = 194 bits (98), Expect = 8e-048
Identities = 355/439 (80%), Gaps = 2/439 (0%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||| ||||| ||||| || || ||||||||||||| || ||||| | ||||| ||
Sbjct: 77 atggctaacagtaaccttcctcgaagaatcatcaaggaaacacagcgtttgctcagtgag 136
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
|||||||| || ||||| || || || || ||||| || |||||||| |||||||| |||
Sbjct: 137 ccagcgcctggaattagtgcatccccttccgaagacaatatgcggtatttcaatgtgatg 196
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| | ||||| || |||||||| |||||||||||||| || ||||| |||
Sbjct: 197 atccttggcccaactcagtctccttatgaagggggagttttcaagctagaactatttttg 256
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtttctcaccaaaatttaccatccg 294
||||| ||||||||||||||||| || || |||||||| | || ||||| || |||||
Sbjct: 257 cctgaagaatatccaatggctgctccaaaggttaggttcttgacaaaaatatatcatcct 316
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaa-atggagtcccgc 353
||||||||||||||||| |||||||| || || ||||| || || || |||||||| ||
Sbjct: 317 aacattgacaagcttggcaggatatgtcttgatattctgaaagataagttggagtcctgc 376
Query: 354 tcttcagatacgtacagttctgctcagcattcaggcacttctg-agtgccccaaatccag 412
|| ||||| || || || || | || ||||| || ||| || | ||| ||||| ||||
Sbjct: 377 cctccagattcgcactgtacttttgagtattcaagctcttttgaantgcaccaaacccag 436
Query: 413 atgatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttg 472
|||||||||| || || |||||||| || || |||||||| || |||||||||||| |||
Sbjct: 437 atgatcctctttctgagaacattgctaagcattggaaatctaacgaagctgaagctgttg 496
Query: 473 agacagcgaaggagtggac 491
| ||||| || || |||||
Sbjct: 497 anacagccaaagantggac 515
>gb|AJ504176.1|AJ504176 AJ504176 MTAMP Medicago truncatula cDNA clone mtgmadc120044b06,
mRNA sequence
Length = 280
Score = 131 bits (66), Expect = 1e-028
Identities = 180/218 (82%)
Strand = Plus / Plus
Query: 55 atggccaacagcaacctcccgcgccgaatcatcaaggagacgcagcggctcctcagcgaa 114
||||| ||||| ||||| || || ||||||||||||| || ||||| | ||||| ||
Sbjct: 56 atggctaacagtaaccttcctcgaagaatcatcaaggaaacacagcgtttgctcagtgag 115
Query: 115 ccagcgccggggattagcgcgtcgccgtcggaagagaacatgcggtacttcaatgtcatg 174
|||||||| || ||||| || || || || ||||| || |||||||| |||||||| |||
Sbjct: 116 ccagcgcctggaattagtgcatccccttccgaagacaatatgcggtatttcaatgtgatg 175
Query: 175 atccttggccccgcacagtcaccctatgaaggtggagttttcaagcttgagctattcttg 234
||||||||||| | ||||| || |||||||| |||||||||||||| || |||| |||
Sbjct: 176 atccttggcccaactcagtctccttatgaagggggagttttcaagctagaactatatttg 235
Query: 235 cctgaggaatatccaatggctgccccgaaagttaggtt 272
||||| ||||||||||||||||| || || ||||||||
Sbjct: 236 cctgaagaatatccaatggctgctccaaaggttaggtt 273
>gb|AL387802.1|AL387802 MtBC44G07R1 MtBC Medicago truncatula cDNA clone MtBC44G07 T7, mRNA
sequence
Length = 539
Score = 75.8 bits (38), Expect = 5e-012
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
||||| || ||| ||||||| ||||| |||||||||||||| || || |||||||| ||
Sbjct: 74 attcaagctcttttgagtgcaccaaacccagatgatcctctttctgagaacattgctaag 133
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggac 491
|| |||||||| || || ||||| ||| |||||||||| || ||||||||
Sbjct: 134 cattggaaatctaacgaggctgaggctgttgagacagccaaagagtggac 183
>gb|CX529542.1|CX529542 s13dNF97E03MJ019_245135 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 553
Score = 75.8 bits (38), Expect = 5e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
||||| || ||| ||||||| ||||| |||||||||||||| || || |||||||| ||
Sbjct: 34 attcaagctcttttgagtgcaccaaacccagatgatcctctttctgagaacattgctaag 93
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacagc 479
|| |||||||| ||||| ||||| ||| ||||||||||
Sbjct: 94 cattggaaatctaatgaggctgaggctgttgagacagc 131
>gb|BG582270.1|BG582270 EST484010 GVN Medicago truncatula cDNA clone pGVN-69M23 5' end,
mRNA sequence
Length = 688
Score = 73.8 bits (37), Expect = 2e-011
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
||||| || ||| ||||||| ||||| |||||||||||||| || || |||||||| ||
Sbjct: 18 attcaagctcttttgagtgcaccaaacccagatgatcctctttctgagaacattgctaag 77
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacag 478
|| |||||||| ||||| ||||| ||| |||||||||
Sbjct: 78 cattggaaatctaatgaggctgaggctgttgagacag 114
>gb|AL387801.1|AL387801 MtBC44G07F1 MtBC Medicago truncatula cDNA clone MtBC44G07 T3, mRNA
sequence
Length = 479
Score = 50.1 bits (25), Expect = 3e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 290 atccgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtc 349
|||| ||||||||||||||||| |||||||| || || ||||| || || || |||||||
Sbjct: 366 atcctaacattgacaagcttggcaggatatgtcttgatattctgaaagataagtggagtc 425
Query: 350 c 350
|
Sbjct: 426 c 426
>gb|CG928443.1|CG928443 MBENA23TF mth2 Medicago truncatula genomic clone 6C21, DNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 116 ctcgacattcttaaggaacaatggagccccgc 85
>gb|AW329631.2|AW329631 N200891e rootphos(-) Medicago truncatula cDNA clone MHRP-22D4, mRNA
sequence
Length = 501
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 268 ctcgacattcttaaggaacaatggagccccgc 299
>gb|AW776686.1|AW776686 EST335751 DSIL Medicago truncatula cDNA clone pDSIL-13F10, mRNA
sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 243 ctcgacattcttaaggaacaatggagccccgc 274
>gb|AW208309.2|AW208309 M110974e GVSN Medicago truncatula cDNA clone SN303, mRNA sequence
Length = 395
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 256 ctcgacattcttaaggaacaatggagccccgc 287
>gb|BE123948.1|BE123948 EST394073 DSIL Medicago truncatula cDNA clone pDSIL-11B12, mRNA
sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 375 ctcgacattcttaaggaacaatggagccccgc 344
>gb|BE124362.1|BE124362 EST393397 GVN Medicago truncatula cDNA clone pGVN-58G19, mRNA
sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 283 ctcgacattcttaaggaacaatggagccccgc 314
>gb|BE240699.1|BE240699 EST404748 MHRP- Medicago truncatula cDNA clone pMHRP-47F7, mRNA
sequence
Length = 362
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 33 ctcgacattcttaaggaacaatggagccccgc 64
>gb|AL371403.1|AL371403 MtBA44A04F1 MtBA Medicago truncatula cDNA clone MtBA44A04 T3, mRNA
sequence
Length = 413
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 297 ctcgacattcttaaggaacaatggagccccgc 328
>gb|AL371404.1|AL371404 MtBA44A04R1 MtBA Medicago truncatula cDNA clone MtBA44A04 T7, mRNA
sequence
Length = 507
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 70 ctcgacattcttaaggaacaatggagccccgc 101
>gb|AL376322.1|AL376322 MtBB22H06F1 MtBB Medicago truncatula cDNA clone MtBB22H06 T3, mRNA
sequence
Length = 390
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 342 ctcgacattcttaaggaacaatggagccccgc 373
>gb|AL376323.1|AL376323 MtBB22H06R1 MtBB Medicago truncatula cDNA clone MtBB22H06 T7, mRNA
sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 60 ctcgacattcttaaggaacaatggagccccgc 91
>gb|AL379833.1|AL379833 MtBB47G01R1 MtBB Medicago truncatula cDNA clone MtBB47G01 T7, mRNA
sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 98 ctcgacattcttaaggaacaatggagccccgc 129
>gb|AL382383.1|AL382383 MtBC06E02F1 MtBC Medicago truncatula cDNA clone MtBC06E02 T3, mRNA
sequence
Length = 431
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 393 ctcgacattcttaaggaacaatggagccccgc 424
>gb|AL382384.1|AL382384 MtBC06E02R1 MtBC Medicago truncatula cDNA clone MtBC06E02 T7, mRNA
sequence
Length = 535
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 75 ctcgacattcttaaggaacaatggagccccgc 106
>gb|AL383424.1|AL383424 MtBC14A11R1 MtBC Medicago truncatula cDNA clone MtBC14A11 T7, mRNA
sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 61 ctcgacattcttaaggaacaatggagccccgc 92
>gb|AL383574.1|AL383574 MtBC15C04F1 MtBC Medicago truncatula cDNA clone MtBC15C04 T3, mRNA
sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 229 ctcgacattcttaaggaacaatggagccccgc 260
>gb|AL386241.1|AL386241 MtBC33D11F1 MtBC Medicago truncatula cDNA clone MtBC33D11 T3, mRNA
sequence
Length = 462
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 152 ctcgacattcttaaggaacaatggagccccgc 183
>gb|AL386242.1|AL386242 MtBC33D11R1 MtBC Medicago truncatula cDNA clone MtBC33D11 T7, mRNA
sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 114 ctcgacattcttaaggaacaatggagccccgc 145
>gb|BE941595.1|BE941595 EST421174 MGHG Medicago truncatula cDNA clone pMGHG-4O20, mRNA
sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 272 ctcgacattcttaaggaacaatggagccccgc 303
>gb|BE941596.1|BE941596 EST421175 MGHG Medicago truncatula cDNA clone pMGHG-4O22, mRNA
sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 289 ctcgacattcttaaggaacaatggagccccgc 320
>gb|BF519479.1|BF519479 EST456942 DSIL Medicago truncatula cDNA clone pDSIL-20F22, mRNA
sequence
Length = 298
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 260 ctcgacattcttaaggaacaatggagccccgc 291
>gb|BF519545.1|BF519545 EST457009 DSIL Medicago truncatula cDNA clone pDSIL-21C19, mRNA
sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 259 ctcgacattcttaaggaacaatggagccccgc 290
>gb|BF520665.1|BF520665 EST458138 DSIL Medicago truncatula cDNA clone pDSIL-39E15, mRNA
sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 240 ctcgacattcttaaggaacaatggagccccgc 271
>gb|BF520982.1|BF520982 EST458446 DSIL Medicago truncatula cDNA clone pDSIL-39P24, mRNA
sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 257 ctcgacattcttaaggaacaatggagccccgc 288
>gb|BF638139.1|BF638139 NF044C12PL1F1088 Phosphate starved leaf Medicago truncatula cDNA
clone NF044C12PL 5', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 345 ctcgacattcttaaggaacaatggagccccgc 376
>gb|BF645087.1|BF645087 NF034E07EC1F1054 Elicited cell culture Medicago truncatula cDNA
clone NF034E07EC 5', mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 326 ctcgacattcttaaggaacaatggagccccgc 357
>gb|BF649734.1|BF649734 NF084B11EC1F1091 Elicited cell culture Medicago truncatula cDNA
clone NF084B11EC 5', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 326 ctcgacattcttaaggaacaatggagccccgc 357
>gb|BF651108.1|BF651108 NF101B11EC1F1091 Elicited cell culture Medicago truncatula cDNA
clone NF101B11EC 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 238 ctcgacattcttaaggaacaatggagccccgc 269
>gb|BG455559.1|BG455559 NF065E04PL1F1033 Phosphate starved leaf Medicago truncatula cDNA
clone NF065E04PL 5', mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 306 ctcgacattcttaaggaacaatggagccccgc 337
>gb|BG456226.1|BG456226 NF076F07PL1F1061 Phosphate starved leaf Medicago truncatula cDNA
clone NF076F07PL 5', mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 270 ctcgacattcttaaggaacaatggagccccgc 301
>gb|BG580106.1|BG580106 EST481828 GVN Medicago truncatula cDNA clone pGVN-36F6 5' end, mRNA
sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 269 ctcgacattcttaaggaacaatggagccccgc 300
>gb|BG582232.1|BG582232 EST483972 GVN Medicago truncatula cDNA clone pGVN-69G7 5' end, mRNA
sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 143 ctcgacattcttaaggaacaatggagccccgc 174
>gb|BG583003.1|BG583003 EST484742 GVN Medicago truncatula cDNA clone pGVN-71G8 5' end, mRNA
sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 251 ctcgacattcttaaggaacaatggagccccgc 282
>gb|BG647480.1|BG647480 EST509099 HOGA Medicago truncatula cDNA clone pHOGA-17C11 5' end,
mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 156 ctcgacattcttaaggaacaatggagccccgc 187
>gb|BI272707.1|BI272707 NF027A11FL1F1084 Developing flower Medicago truncatula cDNA clone
NF027A11FL 5', mRNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 298 ctcgacattcttaaggaacaatggagccccgc 329
>gb|BQ153458.1|BQ153458 NF037A10IR1F1071 Irradiated Medicago truncatula cDNA clone
NF037A10IR 5', mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 356 ctcgacattcttaaggaacaatggagccccgc 387
>gb|BQ255351.1|BQ255351 MTNAG84TKN KVKC Medicago truncatula cDNA clone pKVKC-7G12, mRNA
sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 248 ctcgacattcttaaggaacaatggagccccgc 279
>gb|AJ497330.1|AJ497330 AJ497330 MTFLOW Medicago truncatula cDNA clone mt--abc955107h06,
mRNA sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 222 ctcgacattcttaaggaacaatggagccccgc 253
>gb|AJ497383.1|AJ497383 AJ497383 MTFLOW Medicago truncatula cDNA clone mt--abc955108e12,
mRNA sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 206 ctcgacattcttaaggaacaatggagccccgc 237
>gb|AJ497838.1|AJ497838 AJ497838 MTFLOW Medicago truncatula cDNA clone mt--abc955115b03,
mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 322 ctcgacattcttaaggacaaatggagtcccgc 353
||||||||||||||||| ||||||| |||||
Sbjct: 245 ctcgacattcttaaggaacaatggagccccgc 276
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 163,899
Number of Sequences: 392609
Number of extensions: 163899
Number of successful extensions: 11283
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11219
Number of HSP's gapped (non-prelim): 60
length of query: 825
length of database: 441,732,993
effective HSP length: 20
effective length of query: 805
effective length of database: 433,880,813
effective search space: 349274054465
effective search space used: 349274054465
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)