BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3311938.2.1
(1003 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC151914.19| Medicago truncatula clone mth2-29f16, compl... 42 0.089
>gb|AC151914.19| Medicago truncatula clone mth2-29f16, complete sequence
Length = 111276
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 955 tttaaaatgaatacatatttt 975
|||||||||||||||||||||
Sbjct: 77104 tttaaaatgaatacatatttt 77124
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 214,460
Number of Sequences: 392609
Number of extensions: 214460
Number of successful extensions: 17617
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17608
Number of HSP's gapped (non-prelim): 9
length of query: 1003
length of database: 441,732,993
effective HSP length: 20
effective length of query: 983
effective length of database: 433,880,813
effective search space: 426504839179
effective search space used: 426504839179
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)