BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.2
(534 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE203529.1|BE203529 EST396213 KV0 Medicago truncatula cD... 50 2e-004
gb|AL380077.1|AL380077 MtBB50C07F1 MtBB Medicago truncatula... 50 2e-004
gb|AL380078.1|AL380078 MtBB50C07R1 MtBB Medicago truncatula... 50 2e-004
gb|AJ497829.1|AJ497829 AJ497829 MTFLOW Medicago truncatula ... 50 2e-004
gb|BE999716.1|BE999716 EST431439 GVSN Medicago truncatula c... 44 0.012
gb|CX522333.1|CX522333 s13dNF78C09VI068_470470 Virus-Infect... 44 0.012
gb|AC146914.9| Medicago truncatula clone mth2-57l14, comple... 40 0.18
gb|AC136839.19| Medicago truncatula clone mth2-13n2, comple... 40 0.18
>gb|BE203529.1|BE203529 EST396213 KV0 Medicago truncatula cDNA clone pKV0-10O6, mRNA
sequence
Length = 498
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 242 cgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaag 301
|||||||| ||||| ||||| || |||||| |||| | || || ||| |||| || |||
Sbjct: 5 cgtagtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaag 64
Query: 302 caagtcacggagtacatctctgatgagccgtggggatggta 342
||||| || |||||||||||||||| || ||||| |||||
Sbjct: 65 caagtgactcagtacatctctgatgaaccatggggctggta 105
>gb|AL380077.1|AL380077 MtBB50C07F1 MtBB Medicago truncatula cDNA clone MtBB50C07 T3, mRNA
sequence
Length = 450
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 242 cgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaag 301
|||||||| ||||| ||||| || |||||| |||| | || || ||| |||| || |||
Sbjct: 333 cgtagtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaag 392
Query: 302 caagtcacggagtacatctctgatgagccgtggggatggta 342
||||| || |||||||||||||||| || ||||| |||||
Sbjct: 393 caagtgactcagtacatctctgatgaaccatggggctggta 433
>gb|AL380078.1|AL380078 MtBB50C07R1 MtBB Medicago truncatula cDNA clone MtBB50C07 T7, mRNA
sequence
Length = 498
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 242 cgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaag 301
|||||||| ||||| ||||| || |||||| |||| | || || ||| |||| || |||
Sbjct: 188 cgtagtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaag 247
Query: 302 caagtcacggagtacatctctgatgagccgtggggatggta 342
||||| || |||||||||||||||| || ||||| |||||
Sbjct: 248 caagtgactcagtacatctctgatgaaccatggggctggta 288
>gb|AJ497829.1|AJ497829 AJ497829 MTFLOW Medicago truncatula cDNA clone mt--abc955114h10,
mRNA sequence
Length = 631
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 242 cgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaag 301
|||||||| ||||| ||||| || |||||| |||| | || || ||| |||| || |||
Sbjct: 266 cgtagtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaag 325
Query: 302 caagtcacggagtacatctctgatgagccgtggggatggta 342
||||| || |||||||||||||||| || ||||| |||||
Sbjct: 326 caagtgactcagtacatctctgatgaaccatggggctggta 366
>gb|BE999716.1|BE999716 EST431439 GVSN Medicago truncatula cDNA clone pGVSN-24G18, mRNA
sequence
Length = 688
Score = 44.1 bits (22), Expect = 0.012
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 242 cgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaag 301
|||||||| ||||| ||||| || ||||| |||| | || || ||| |||| || |||
Sbjct: 558 cgtagtggttttggccgtgaactangagaatggggattggacaattacttgagtgtgaag 617
Query: 302 caagtcacggagtacatctctgatgagccgtggggatggta 342
||||| || |||||||||||||||| || ||||| |||||
Sbjct: 618 caagtgactcagtacatctctgatgaaccatggggctggta 658
>gb|CX522333.1|CX522333 s13dNF78C09VI068_470470 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 488
Score = 44.1 bits (22), Expect = 0.012
Identities = 70/86 (81%)
Strand = Plus / Plus
Query: 242 cgtagtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaag 301
|||||||| ||||| ||||| || |||||| |||| | || || ||| |||| || |||
Sbjct: 403 cgtagtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaag 462
Query: 302 caagtcacggagtacatctctgatga 327
||||| || ||||||||||||||||
Sbjct: 463 caagtgactcagtacatctctgatga 488
>gb|AC146914.9| Medicago truncatula clone mth2-57l14, complete sequence
Length = 122769
Score = 40.1 bits (20), Expect = 0.18
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 299 aagcaagtcacggagtacatctctgatgagccgtggggatggta 342
|||||||| || |||||||||||||||| || ||||| |||||
Sbjct: 30821 aagcaagtgactcagtacatctctgatgaaccatggggctggta 30778
>gb|AC136839.19| Medicago truncatula clone mth2-13n2, complete sequence
Length = 122138
Score = 40.1 bits (20), Expect = 0.18
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 299 aagcaagtcacggagtacatctctgatgagccgtggggatggta 342
|||||||| || |||||||||||||||| || ||||| |||||
Sbjct: 46863 aagcaagtgactcagtacatctctgatgaaccatggggctggta 46820
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,325
Number of Sequences: 392609
Number of extensions: 137325
Number of successful extensions: 9190
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9176
Number of HSP's gapped (non-prelim): 14
length of query: 534
length of database: 441,732,993
effective HSP length: 19
effective length of query: 515
effective length of database: 434,273,422
effective search space: 223650812330
effective search space used: 223650812330
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)