BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3191495.2.1
         (1277 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC143341.8|  Medicago truncatula clone mth2-7a11, complet...    40   0.45 
gb|AC149641.1|  Medicago truncatula chromosome 7 clone mth2-...    40   0.45 
gb|AC149579.11|  Medicago truncatula clone mth2-99d8, comple...    40   0.45 
emb|CT027660.1|  Medicago truncatula chromosome 5 clone mth4...    40   0.45 
gb|AC156627.10|  Medicago truncatula clone mth2-168e8, WORKI...    40   0.45 

>gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete sequence
          Length = 111446

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1023  tcttcttcatctccatatat 1042
             ||||||||||||||||||||
Sbjct: 25443 tcttcttcatctccatatat 25462



>gb|AC149641.1| Medicago truncatula chromosome 7 clone mth2-55l11, *** SEQUENCING IN
            PROGRESS ***, 3 ordered pieces
          Length = 117197

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1012 ctccttctccatcttcttca 1031
            ||||||||||||||||||||
Sbjct: 2220 ctccttctccatcttcttca 2239



>gb|AC149579.11| Medicago truncatula clone mth2-99d8, complete sequence
          Length = 111010

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1012   ctccttctccatcttcttca 1031
              ||||||||||||||||||||
Sbjct: 108874 ctccttctccatcttcttca 108855



>emb|CT027660.1| Medicago truncatula chromosome 5 clone mth4-7a11, WORKING DRAFT
             SEQUENCE
          Length = 107624

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 85    tggctgtggcgttggtgttcttggtgag 112
             ||||||||||||||| ||| ||||||||
Sbjct: 43606 tggctgtggcgttggggtttttggtgag 43579



>gb|AC156627.10| Medicago truncatula clone mth2-168e8, WORKING DRAFT SEQUENCE, 20
              unordered pieces
          Length = 113525

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1012   ctccttctccatcttcttca 1031
              ||||||||||||||||||||
Sbjct: 109154 ctccttctccatcttcttca 109135



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 309,821
Number of Sequences: 392609
Number of extensions: 309821
Number of successful extensions: 25149
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25115
Number of HSP's gapped (non-prelim): 34
length of query: 1277
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1257
effective length of database: 433,880,813
effective search space: 545388181941
effective search space used: 545388181941
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)