BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3184970.2.1
(1043 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG944509.1|CG944509 MBEDV45TRC mth2 Medicago truncatula ... 46 0.006
gb|AC140774.7| Medicago truncatula clone mth2-5e11, complet... 46 0.006
gb|AC139841.14| Medicago truncatula clone mth2-35g18, WORKI... 46 0.006
emb|CR344119.1| mte1-77F3RM1 BAC end, cultivar Jemalong A17... 44 0.023
gb|BG449009.1|BG449009 NF003G12IN1F1100 Insect herbivory Me... 44 0.023
gb|BI269537.1|BI269537 NF004F09IR1F1078 Irradiated Medicago... 44 0.023
gb|BQ124909.1|BQ124909 EST610485 GLSD Medicago truncatula c... 44 0.023
gb|BQ143906.1|BQ143906 NF037F02DT1F1016 Drought Medicago tr... 44 0.023
gb|BQ153299.1|BQ153299 NF033G05IR1F1038 Irradiated Medicago... 44 0.023
gb|BQ155428.1|BQ155428 NF080D07IR1F1062 Irradiated Medicago... 44 0.023
gb|BQ155812.1|BQ155812 NF084E11IR1F1087 Irradiated Medicago... 44 0.023
gb|BQ155892.1|BQ155892 NF085D01IR1F1014 Irradiated Medicago... 44 0.023
gb|BQ155911.1|BQ155911 NF085F02IR1F1027 Irradiated Medicago... 44 0.023
gb|BQ156286.1|BQ156286 NF091C01IR1F1006 Irradiated Medicago... 44 0.023
gb|BQ165638.1|BQ165638 EST611507 KVKC Medicago truncatula c... 44 0.023
gb|CA858965.1|CA858965 EST636220 GLSD Medicago truncatula c... 44 0.023
gb|CX517163.1|CX517163 s13dNF14D07VI062_398797 Virus-Infect... 44 0.023
gb|CX517299.1|CX517299 s13dNF07C08VI066_399617 Virus-Infect... 44 0.023
gb|CX520567.1|CX520567 s13dNF57C09VI068_448920 Virus-Infect... 44 0.023
gb|CX523055.1|CX523055 s13dNF88B10VI089_471914 Virus-Infect... 44 0.023
gb|AC148763.14| Medicago truncatula clone mth2-29o24, compl... 44 0.023
emb|CR965857.1| mth4-5M15RM1 BAC end, cultivar Jemalong A17... 42 0.093
gb|AF167323.1|AF167323 Medicago truncatula clone T130002g p... 42 0.093
gb|AC160013.10| Medicago truncatula clone mth2-162b23, WORK... 42 0.093
gb|AC126009.22| Medicago truncatula clone mth2-15c20, compl... 40 0.37
gb|AC137822.30| Medicago truncatula clone mth2-31e20, compl... 40 0.37
gb|AC137823.45| Medicago truncatula clone mth2-14c17, compl... 40 0.37
emb|CR931808.2| Medicago truncatula chromosome 5 clone mth2... 40 0.37
gb|AC157501.1| Medicago truncatula chromosome 7 clone mte1-... 40 0.37
gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone m... 40 0.37
emb|CT009656.1| Medicago truncatula chromosome 5 clone mth2... 40 0.37
gb|AC137521.31| Medicago truncatula clone mth2-11o9, WORKIN... 40 0.37
emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2... 40 0.37
>gb|CG944509.1|CG944509 MBEDV45TRC mth2 Medicago truncatula genomic clone 35G18, DNA
sequence
Length = 803
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 attttgatttgatttgatttatt 93
|||||||||||||||||||||||
Sbjct: 581 attttgatttgatttgatttatt 603
>gb|AC140774.7| Medicago truncatula clone mth2-5e11, complete sequence
Length = 116998
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tttattttgatttgatttgattt 90
|||||||||||||||||||||||
Sbjct: 101296 tttattttgatttgatttgattt 101318
>gb|AC139841.14| Medicago truncatula clone mth2-35g18, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 125452
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 attttgatttgatttgatttatt 93
|||||||||||||||||||||||
Sbjct: 582 attttgatttgatttgatttatt 604
>emb|CR344119.1| mte1-77F3RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 68 tttattttgatttgatttgatt 89
||||||||||||||||||||||
Sbjct: 599 tttattttgatttgatttgatt 578
>gb|BG449009.1|BG449009 NF003G12IN1F1100 Insect herbivory Medicago truncatula cDNA clone
NF003G12IN 5', mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 268 gccgttgattatgttggtgatcacgccgta 297
>gb|BI269537.1|BI269537 NF004F09IR1F1078 Irradiated Medicago truncatula cDNA clone
NF004F09IR 5', mRNA sequence
Length = 618
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 321 gccgttgattatgttggtgatcacgccgta 292
>gb|BQ124909.1|BQ124909 EST610485 GLSD Medicago truncatula cDNA clone pGLSD-37H15, mRNA
sequence
Length = 783
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 749 gccgttgattatgttggtgatcacgccgta 720
>gb|BQ143906.1|BQ143906 NF037F02DT1F1016 Drought Medicago truncatula cDNA clone NF037F02DT
5', mRNA sequence
Length = 806
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 338 gccgttgattatgttggtgatcacgccgta 309
>gb|BQ153299.1|BQ153299 NF033G05IR1F1038 Irradiated Medicago truncatula cDNA clone
NF033G05IR 5', mRNA sequence
Length = 432
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 321 gccgttgattatgttggtgatcacgccgta 292
>gb|BQ155428.1|BQ155428 NF080D07IR1F1062 Irradiated Medicago truncatula cDNA clone
NF080D07IR 5', mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 321 gccgttgattatgttggtgatcacgccgta 292
>gb|BQ155812.1|BQ155812 NF084E11IR1F1087 Irradiated Medicago truncatula cDNA clone
NF084E11IR 5', mRNA sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 321 gccgttgattatgttggtgatcacgccgta 292
>gb|BQ155892.1|BQ155892 NF085D01IR1F1014 Irradiated Medicago truncatula cDNA clone
NF085D01IR 5', mRNA sequence
Length = 629
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 321 gccgttgattatgttggtgatcacgccgta 292
>gb|BQ155911.1|BQ155911 NF085F02IR1F1027 Irradiated Medicago truncatula cDNA clone
NF085F02IR 5', mRNA sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 321 gccgttgattatgttggtgatcacgccgta 292
>gb|BQ156286.1|BQ156286 NF091C01IR1F1006 Irradiated Medicago truncatula cDNA clone
NF091C01IR 5', mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 321 gccgttgattatgttggtgatcacgccgta 292
>gb|BQ165638.1|BQ165638 EST611507 KVKC Medicago truncatula cDNA clone pKVKC-10F8, mRNA
sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 240 gccgttgattatgttggtgatcacgccgta 269
>gb|CA858965.1|CA858965 EST636220 GLSD Medicago truncatula cDNA clone pGLSD-39H17, mRNA
sequence
Length = 738
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 733 gccgttgattatgttggtgatcacgccgta 704
>gb|CX517163.1|CX517163 s13dNF14D07VI062_398797 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 314
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 66 gccgttgattatgttggtgatcacgccgta 37
>gb|CX517299.1|CX517299 s13dNF07C08VI066_399617 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 532
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 363 gccgttgattatgttggtgatcacgccgta 334
>gb|CX520567.1|CX520567 s13dNF57C09VI068_448920 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 530
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 361 gccgttgattatgttggtgatcacgccgta 332
>gb|CX523055.1|CX523055 s13dNF88B10VI089_471914 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 484 gccgttgattatgttggtgatcacgccgta 455
>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
Length = 104879
Score = 44.1 bits (22), Expect = 0.023
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 378 gccgttgatgatgttggtgatgacgccgta 407
||||||||| ||||||||||| ||||||||
Sbjct: 29233 gccgttgattatgttggtgatcacgccgta 29262
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 379 ccgttgatgatgttggtgatgacgccgta 407
|||||||| ||||||||||| ||||||||
Sbjct: 25108 ccgttgattatgttggtgatcacgccgta 25136
>emb|CR965857.1| mth4-5M15RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.093
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 383 tgatgatgttggtgatgacgc 403
|||||||||||||||||||||
Sbjct: 349 tgatgatgttggtgatgacgc 369
>gb|AF167323.1|AF167323 Medicago truncatula clone T130002g putative chitinase gene, partial
cds
Length = 260
Score = 42.1 bits (21), Expect = 0.093
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 379 ccgttgatgatgttggtgatgacgccgta 407
|||||||| ||||||||||| ||||||||
Sbjct: 162 ccgttgattatgttggtgatcacgccgta 134
>gb|AC160013.10| Medicago truncatula clone mth2-162b23, WORKING DRAFT SEQUENCE, 4
ordered pieces
Length = 117818
Score = 42.1 bits (21), Expect = 0.093
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tttgatttgatttgatttatt 93
|||||||||||||||||||||
Sbjct: 40898 tttgatttgatttgatttatt 40918
>gb|AC126009.22| Medicago truncatula clone mth2-15c20, complete sequence
Length = 118705
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 attttgatttgatttgattt 90
||||||||||||||||||||
Sbjct: 74186 attttgatttgatttgattt 74167
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgatttat 92
||||||||||||||||||||
Sbjct: 74179 tttgatttgatttgatttat 74160
>gb|AC137822.30| Medicago truncatula clone mth2-31e20, complete sequence
Length = 140561
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 attttgatttgatttgattt 90
||||||||||||||||||||
Sbjct: 58716 attttgatttgatttgattt 58697
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgatttat 92
||||||||||||||||||||
Sbjct: 58709 tttgatttgatttgatttat 58690
>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence
Length = 135139
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 attttgatttgatttgattt 90
||||||||||||||||||||
Sbjct: 105855 attttgatttgatttgattt 105874
>emb|CR931808.2| Medicago truncatula chromosome 5 clone mth2-144o15, COMPLETE SEQUENCE
Length = 124859
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 72 ttttgatttgatttgattta 91
||||||||||||||||||||
Sbjct: 31799 ttttgatttgatttgattta 31780
>gb|AC157501.1| Medicago truncatula chromosome 7 clone mte1-27e16, *** SEQUENCING IN
PROGRESS ***, 12 unordered pieces
Length = 124106
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 attttgatttgatttgattt 90
||||||||||||||||||||
Sbjct: 5970 attttgatttgatttgattt 5989
>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete sequence
Length = 123340
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 attttgatttgatttgattt 90
||||||||||||||||||||
Sbjct: 113855 attttgatttgatttgattt 113836
>emb|CT009656.1| Medicago truncatula chromosome 5 clone mth2-154o18, WORKING DRAFT
SEQUENCE
Length = 107180
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 72 ttttgatttgatttgattta 91
||||||||||||||||||||
Sbjct: 103492 ttttgatttgatttgattta 103473
>gb|AC137521.31| Medicago truncatula clone mth2-11o9, WORKING DRAFT SEQUENCE, 16 unordered
pieces
Length = 291529
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 attttgatttgatttgattt 90
||||||||||||||||||||
Sbjct: 225588 attttgatttgatttgattt 225569
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgatttat 92
||||||||||||||||||||
Sbjct: 225581 tttgatttgatttgatttat 225562
>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE
Length = 131814
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 73 tttgatttgatttgatttat 92
||||||||||||||||||||
Sbjct: 47056 tttgatttgatttgatttat 47037
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181,559
Number of Sequences: 392609
Number of extensions: 181559
Number of successful extensions: 17601
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17431
Number of HSP's gapped (non-prelim): 144
length of query: 1043
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1023
effective length of database: 433,880,813
effective search space: 443860071699
effective search space used: 443860071699
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)