BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3148257.2.1
         (675 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BQ146639.1|BQ146639  NF019H06FL1F1059 Developing flower M...    42   0.060
gb|BQ146781.1|BQ146781  NF028C04FL1F1033 Developing flower M...    42   0.060
gb|BQ152280.1|BQ152280  NF015C11IR1F1085 Irradiated Medicago...    42   0.060
gb|BQ152822.1|BQ152822  NF025E02IR1F1019 Irradiated Medicago...    42   0.060
gb|AW688488.2|AW688488  NF008B12ST1F1000 Developing stem Med...    40   0.24 
gb|AW687949.2|AW687949  NF001D01ST1F1000 Developing stem Med...    40   0.24 
gb|BG457717.1|BG457717  NF106B09PL1F1075 Phosphate starved l...    40   0.24 
gb|BQ135436.1|BQ135436  NF006A09EC1F1066 Elicited cell cultu...    40   0.24 
gb|BQ151951.1|BQ151951  NF002E08IR1F1066 Irradiated Medicago...    40   0.24 
gb|CX537901.1|CX537901  s13dNF38B03GS025_459040 Germinating ...    40   0.24 

>gb|BQ146639.1|BQ146639 NF019H06FL1F1059 Developing flower Medicago truncatula cDNA clone
           NF019H06FL 5', mRNA sequence
          Length = 827

 Score = 42.1 bits (21), Expect = 0.060
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   gaattcggcacgaggctcgag 21
           |||||||||||||||||||||
Sbjct: 102 gaattcggcacgaggctcgag 122



>gb|BQ146781.1|BQ146781 NF028C04FL1F1033 Developing flower Medicago truncatula cDNA clone
          NF028C04FL 5', mRNA sequence
          Length = 567

 Score = 42.1 bits (21), Expect = 0.060
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  gaattcggcacgaggctcgag 21
          |||||||||||||||||||||
Sbjct: 10 gaattcggcacgaggctcgag 30



>gb|BQ152280.1|BQ152280 NF015C11IR1F1085 Irradiated Medicago truncatula cDNA clone
           NF015C11IR 5', mRNA sequence
          Length = 799

 Score = 42.1 bits (21), Expect = 0.060
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   gaattcggcacgaggctcgag 21
           |||||||||||||||||||||
Sbjct: 104 gaattcggcacgaggctcgag 124



>gb|BQ152822.1|BQ152822 NF025E02IR1F1019 Irradiated Medicago truncatula cDNA clone
          NF025E02IR 5', mRNA sequence
          Length = 274

 Score = 42.1 bits (21), Expect = 0.060
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  gaattcggcacgaggctcgag 21
          |||||||||||||||||||||
Sbjct: 10 gaattcggcacgaggctcgag 30



>gb|AW688488.2|AW688488 NF008B12ST1F1000 Developing stem Medicago truncatula cDNA clone
           NF008B12ST 5', mRNA sequence
          Length = 806

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gaattcggcacgaggctcga 20
           ||||||||||||||||||||
Sbjct: 102 gaattcggcacgaggctcga 121



>gb|AW687949.2|AW687949 NF001D01ST1F1000 Developing stem Medicago truncatula cDNA clone
           NF001D01ST 5', mRNA sequence
          Length = 418

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gaattcggcacgaggctcga 20
           ||||||||||||||||||||
Sbjct: 96  gaattcggcacgaggctcga 115



>gb|BG457717.1|BG457717 NF106B09PL1F1075 Phosphate starved leaf Medicago truncatula cDNA
           clone NF106B09PL 5', mRNA sequence
          Length = 657

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 354 aatgaaggttttagcaggggcctccagatatc 385
           ||||||| ||| |||||||| |||||||||||
Sbjct: 26  aatgaagctttcagcaggggtctccagatatc 57



>gb|BQ135436.1|BQ135436 NF006A09EC1F1066 Elicited cell culture Medicago truncatula cDNA
           clone NF006A09EC 5', mRNA sequence
          Length = 855

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   gaattcggcacgaggctcgagaca 24
           |||||||||||||||||| |||||
Sbjct: 103 gaattcggcacgaggctccagaca 126



>gb|BQ151951.1|BQ151951 NF002E08IR1F1066 Irradiated Medicago truncatula cDNA clone
           NF002E08IR 5', mRNA sequence
          Length = 806

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gaattcggcacgaggctcga 20
           ||||||||||||||||||||
Sbjct: 102 gaattcggcacgaggctcga 121



>gb|CX537901.1|CX537901 s13dNF38B03GS025_459040 Germinating Seed Medicago truncatula
          cDNA, mRNA sequence
          Length = 255

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gaattcggcacgaggctcga 20
          ||||||||||||||||||||
Sbjct: 11 gaattcggcacgaggctcga 30



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 185,533
Number of Sequences: 392609
Number of extensions: 185533
Number of successful extensions: 25306
Number of sequences better than  0.5: 11
Number of HSP's better than  0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25292
Number of HSP's gapped (non-prelim): 14
length of query: 675
length of database: 441,732,993
effective HSP length: 19
effective length of query: 656
effective length of database: 434,273,422
effective search space: 284883364832
effective search space used: 284883364832
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)