BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115474.2.1
(798 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC141922.19| Medicago truncatula clone mth2-9n11, comple... 66 5e-009
gb|AC142094.12| Medicago truncatula clone mth2-34h6, comple... 66 5e-009
gb|AC170800.5| Medicago truncatula clone mth2-32n7, complet... 66 5e-009
gb|AC144931.28| Medicago truncatula clone mth2-22b18, compl... 66 5e-009
gb|CX527617.1|CX527617 s13dNF45E07AT055_515746 Aphid-Infect... 60 3e-007
gb|AC146785.12| Medicago truncatula clone mth2-4h4, complet... 58 1e-006
emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2... 58 1e-006
gb|AC147538.15| Medicago truncatula clone mth2-135c7, WORKI... 56 5e-006
gb|AC147538.16| Medicago truncatula clone mth2-135c7, WORKI... 56 5e-006
gb|CA921334.1|CA921334 EST639052 MTUS Medicago truncatula c... 54 2e-005
gb|CX520904.1|CX520904 s13dNF58E12VI099_449594 Virus-Infect... 44 0.018
emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2... 42 0.071
emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1... 42 0.071
gb|AC174287.2| Medicago truncatula clone mth2-32a8, WORKING... 42 0.071
gb|AC160840.20| Medicago truncatula clone mth2-27o21, WORKI... 42 0.071
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
Length = 107448
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 27 gaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatct 86
||||||||||||||||| || ||||||| || | ||||| ||| || ||||| ||||||
Sbjct: 54150 gaaacataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatct 54091
Query: 87 gctgtcatggctaatat 103
||||||||||| |||||
Sbjct: 54090 gctgtcatggccaatat 54074
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||| || || |||||||| ||||||||||| ||||||||
Sbjct: 53584 tccatttctggcatttgaatatccatgaagcaagcatcaaacttgtgagg 53535
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
Length = 151594
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 27 gaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatct 86
||||||||||||||||| || ||||||| || | ||||| ||| || ||||| ||||||
Sbjct: 125910 gaaacataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatct 125969
Query: 87 gctgtcatggctaatat 103
||||||||||| |||||
Sbjct: 125970 gctgtcatggccaatat 125986
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||| || || |||||||| ||||||||||| ||||||||
Sbjct: 126476 tccatttctggcatttgaatatccatgaagcaagcatcaaacttgtgagg 126525
>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
Length = 99712
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 27 gaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatct 86
||||||||||||||||| || ||||||| || | ||||| ||| || ||||| ||||||
Sbjct: 43668 gaaacataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatct 43609
Query: 87 gctgtcatggctaatat 103
||||||||||| |||||
Sbjct: 43608 gctgtcatggccaatat 43592
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||| || || |||||||| ||||||||||| ||||||||
Sbjct: 43102 tccatttctggcatttgaatatccatgaagcaagcatcaaacttgtgagg 43053
>gb|AC144931.28| Medicago truncatula clone mth2-22b18, complete sequence
Length = 122821
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 27 gaaacataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatct 86
||||||||||||||||| || ||||||| || | ||||| ||| || ||||| ||||||
Sbjct: 25685 gaaacataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatct 25626
Query: 87 gctgtcatggctaatat 103
||||||||||| |||||
Sbjct: 25625 gctgtcatggccaatat 25609
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
|||||||| ||||| || || |||||||| ||||||||||| ||||||||
Sbjct: 25119 tccatttctggcatttgaatatccatgaagcaagcatcaaacttgtgagg 25070
>gb|CX527617.1|CX527617 s13dNF45E07AT055_515746 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 600
Score = 60.0 bits (30), Expect = 3e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 204 gcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtga 263
|||||||| || |||||||| ||||| || || |||||||| ||||||||||| ||||||
Sbjct: 590 gcttcaaacccgtccatttctggcatttgaatatccatgaagcaagcatcaaacttgtga 531
Query: 264 gg 265
||
Sbjct: 530 gg 529
>gb|AC146785.12| Medicago truncatula clone mth2-4h4, complete sequence
Length = 149005
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
||||||||||| ||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 8424 ccatccatttctggcatttgaatgtccatgaagcaagcatcaaatttatgagg 8372
>emb|CR932957.2| Medicago truncatula chromosome 5 clone mth2-58c3, COMPLETE SEQUENCE
Length = 136080
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagg 265
||||||||||| ||||| || ||||||||||| ||||||||||| || |||||
Sbjct: 4272 ccatccatttctggcatttgaatgtccatgaagcaagcatcaaatttatgagg 4324
>gb|AC147538.15| Medicago truncatula clone mth2-135c7, WORKING DRAFT SEQUENCE, 5 ordered
pieces
Length = 133186
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaa 256
||||||||||||||||| || || ||||||||||| ||||||||
Sbjct: 59405 ccatccatttcaggcatttgaatatccatgaaacatgcatcaaa 59448
>gb|AC147538.16| Medicago truncatula clone mth2-135c7, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 133436
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaa 256
||||||||||||||||| || || ||||||||||| ||||||||
Sbjct: 59137 ccatccatttcaggcatttgaatatccatgaaacatgcatcaaa 59180
>gb|CA921334.1|CA921334 EST639052 MTUS Medicago truncatula cDNA clone MTUS-39B4, mRNA
sequence
Length = 630
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 29 aacataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgc 88
||||||||||||||| || ||||||| || | ||||| ||| || ||||| ||||||||
Sbjct: 564 aacataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatctgc 623
Query: 89 tgtcatg 95
|||||||
Sbjct: 624 tgtcatg 630
>gb|CX520904.1|CX520904 s13dNF58E12VI099_449594 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 602
Score = 44.1 bits (22), Expect = 0.018
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 207 tcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgagga 266
||||| || |||||||| ||||| || | |||||||| |||||||||||||| || ||
Sbjct: 448 tcaaaaccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggt 389
Query: 267 ggtttcagca 276
||||| ||||
Sbjct: 388 ggtttaagca 379
>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE
Length = 108871
Score = 42.1 bits (21), Expect = 0.071
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttcagc 275
|||||||| ||||| || | |||||||| |||||||||||||| || || ||||| |||
Sbjct: 106284 tccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagc 106343
Query: 276 a 276
|
Sbjct: 106344 a 106344
>emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1-7c20, COMPLETE SEQUENCE
Length = 127003
Score = 42.1 bits (21), Expect = 0.071
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttcagc 275
|||||||| ||||| || | |||||||| |||||||||||||| || || ||||| |||
Sbjct: 119062 tccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagc 119003
Query: 276 a 276
|
Sbjct: 119002 a 119002
>gb|AC174287.2| Medicago truncatula clone mth2-32a8, WORKING DRAFT SEQUENCE, 8
unordered pieces
Length = 107645
Score = 42.1 bits (21), Expect = 0.071
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttcagc 275
|||||||| ||||| || | |||||||| |||||||||||||| || || ||||| |||
Sbjct: 28676 tccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagc 28735
Query: 276 a 276
|
Sbjct: 28736 a 28736
>gb|AC160840.20| Medicago truncatula clone mth2-27o21, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 119300
Score = 42.1 bits (21), Expect = 0.071
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 216 tccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttcagc 275
|||||||| ||||| || | |||||||| |||||||||||||| || || ||||| |||
Sbjct: 111547 tccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagc 111606
Query: 276 a 276
|
Sbjct: 111607 a 111607
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 254,684
Number of Sequences: 392609
Number of extensions: 254684
Number of successful extensions: 19746
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19639
Number of HSP's gapped (non-prelim): 107
length of query: 798
length of database: 441,732,993
effective HSP length: 20
effective length of query: 778
effective length of database: 433,880,813
effective search space: 337559272514
effective search space used: 337559272514
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)