BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115184.2.1
         (642 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC149471.1|  Medicago truncatula chromosome 7 clone mth2-...    44   0.014
gb|BQ145484.1|BQ145484  NF009D04GS1F1041 Germinating Seed Me...    42   0.057
gb|CX537102.1|CX537102  s13dNF09D04GS041_457394 Germinating ...    42   0.057

>gb|AC149471.1| Medicago truncatula chromosome 7 clone mth2-65l2, *** SEQUENCING IN
             PROGRESS ***, 8 unordered pieces
          Length = 138257

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 597   ccattcaaaatatatacatgat 618
             ||||||||||||||||||||||
Sbjct: 46434 ccattcaaaatatatacatgat 46455



>gb|BQ145484.1|BQ145484 NF009D04GS1F1041 Germinating Seed Medicago truncatula cDNA clone
           NF009D04GS 5', mRNA sequence
          Length = 836

 Score = 42.1 bits (21), Expect = 0.057
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 507 ctctctctttctcactctcgccagt 531
           ||||||||||||| |||||||||||
Sbjct: 217 ctctctctttctccctctcgccagt 193



>gb|CX537102.1|CX537102 s13dNF09D04GS041_457394 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 141

 Score = 42.1 bits (21), Expect = 0.057
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 507 ctctctctttctcactctcgccagt 531
           ||||||||||||| |||||||||||
Sbjct: 100 ctctctctttctccctctcgccagt 76



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,636
Number of Sequences: 392609
Number of extensions: 114636
Number of successful extensions: 9483
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9473
Number of HSP's gapped (non-prelim): 10
length of query: 642
length of database: 441,732,993
effective HSP length: 19
effective length of query: 623
effective length of database: 434,273,422
effective search space: 270552341906
effective search space used: 270552341906
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)