BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3115079.2.1
         (636 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC151527.13|  Medicago truncatula clone mth2-135i19, comp...    48   0.001
gb|CG946312.1|CG946312  MBEKR31TF mth2 Medicago truncatula g...    42   0.056
gb|AC123573.39|  Medicago truncatula clone mth2-5n3, WORKING...    42   0.056
gb|AC150776.2|  Medicago truncatula chromosome 7 BAC clone m...    40   0.22 

>gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete sequence
          Length = 132470

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 504   ctcaagcctgttcaatattgctggtccaccaggatgcacagcccaaaa 551
             ||||||| |||| | |||||| || ||||||||||| |||||||||||
Sbjct: 66540 ctcaagcttgttaagtattgcaggcccaccaggatgaacagcccaaaa 66493



>gb|CG946312.1|CG946312 MBEKR31TF mth2 Medicago truncatula genomic clone 76E14, DNA
           sequence
          Length = 883

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 atagatgaagaacacaaatac 159
           |||||||||||||||||||||
Sbjct: 331 atagatgaagaacacaaatac 311



>gb|AC123573.39| Medicago truncatula clone mth2-5n3, WORKING DRAFT SEQUENCE, 2 unordered
             pieces
          Length = 112326

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 145   gaagaacacaaatacagtaaaatat 169
             |||||||||||| ||||||||||||
Sbjct: 20072 gaagaacacaaacacagtaaaatat 20048



>gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone mte1-45n16, complete
             sequence
          Length = 107886

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   atatataattaatctttatg 255
             ||||||||||||||||||||
Sbjct: 47398 atatataattaatctttatg 47417



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 183,511
Number of Sequences: 392609
Number of extensions: 183511
Number of successful extensions: 13100
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13083
Number of HSP's gapped (non-prelim): 17
length of query: 636
length of database: 441,732,993
effective HSP length: 19
effective length of query: 617
effective length of database: 434,273,422
effective search space: 267946701374
effective search space used: 267946701374
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)