BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DW015953.1|DW015953 EST1224914 MTY Medicago truncatula c... 46 0.006
gb|AC139882.29| Medicago truncatula clone mth2-32f21, compl... 40 0.35
gb|AC148818.10| Medicago truncatula clone mth2-39d7, WORKIN... 40 0.35
>gb|DW015953.1|DW015953 EST1224914 MTY Medicago truncatula cDNA clone MTYAB58, mRNA
sequence
Length = 600
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 326 ttgtctccaatgctgccgcaaatccttctgt 356
|||| ||||||||||| ||||||||||||||
Sbjct: 382 ttgtgtccaatgctgctgcaaatccttctgt 412
>gb|AC139882.29| Medicago truncatula clone mth2-32f21, complete sequence
Length = 115770
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 401 gggatattaacgtcaaggct 420
||||||||||||||||||||
Sbjct: 13063 gggatattaacgtcaaggct 13044
>gb|AC148818.10| Medicago truncatula clone mth2-39d7, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 148977
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 401 gggatattaacgtcaaggct 420
||||||||||||||||||||
Sbjct: 9166 gggatattaacgtcaaggct 9147
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 214,212
Number of Sequences: 392609
Number of extensions: 214212
Number of successful extensions: 15857
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15848
Number of HSP's gapped (non-prelim): 9
length of query: 992
length of database: 441,732,993
effective HSP length: 20
effective length of query: 972
effective length of database: 433,880,813
effective search space: 421732150236
effective search space used: 421732150236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)