BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070703.2.1
(1214 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW774471.1|AW774471 EST333622 KV3 Medicago truncatula cD... 86 8e-015
gb|BE942980.1|BE942980 EST422559 MGHG Medicago truncatula c... 86 8e-015
gb|BI308597.1|BI308597 EST530007 GPOD Medicago truncatula c... 86 8e-015
gb|DW018960.1|DW018960 EST1227921 MTY Medicago truncatula c... 86 8e-015
gb|AW695791.1|AW695791 NF098F03ST1F1029 Developing stem Med... 70 5e-010
gb|BE316206.2|BE316206 NF030F03LF1F1027 Developing leaf Med... 70 5e-010
gb|BG582283.1|BG582283 EST484024 GVN Medicago truncatula cD... 70 5e-010
gb|BI271915.1|BI271915 NF016C03FL1F1021 Developing flower M... 70 5e-010
gb|BI272466.1|BI272466 NF021H08FL1F1075 Developing flower M... 70 5e-010
gb|CX527137.1|CX527137 s13dNF40D04AT042_514786 Aphid-Infect... 70 5e-010
gb|BE943067.1|BE943067 EST422646 MGHG Medicago truncatula c... 62 1e-007
gb|BG647065.1|BG647065 EST508684 HOGA Medicago truncatula c... 62 1e-007
gb|BG646934.1|BG646934 EST508553 HOGA Medicago truncatula c... 58 2e-006
gb|CG921448.1|CG921448 MBEMN29TR mth2 Medicago truncatula g... 56 7e-006
gb|CG923927.1|CG923927 MBEHQ63TF mth2 Medicago truncatula g... 56 7e-006
gb|CG925142.1|CG925142 MBEND93TF mth2 Medicago truncatula g... 56 7e-006
gb|CG927378.1|CG927378 MBECD24TF mth2 Medicago truncatula g... 56 7e-006
gb|CG961162.1|CG961162 MBELL07TR mth2 Medicago truncatula g... 56 7e-006
gb|CG971190.1|CG971190 MBEDU72TRC mth2 Medicago truncatula ... 56 7e-006
emb|CR481986.1| mth2-145L11RM1 BAC end, cultivar Jemalong A... 56 7e-006
gb|AW691884.1|AW691884 NF045B08ST1F1000 Developing stem Med... 56 7e-006
gb|AC161863.20| Medicago truncatula clone mth2-175f4, compl... 56 7e-006
gb|AW697303.1|AW697303 NF115B10ST1F1080 Developing stem Med... 52 1e-004
gb|BF519331.1|BF519331 EST456793 DSIL Medicago truncatula c... 52 1e-004
gb|CB891142.1|CB891142 EST648111 KV3 Medicago truncatula cD... 52 1e-004
gb|AL377539.1|AL377539 MtBB32C08F1 MtBB Medicago truncatula... 46 0.007
gb|AW574031.1|AW574031 EST316622 GVN Medicago truncatula cD... 44 0.027
gb|AJ497814.1|AJ497814 AJ497814 MTFLOW Medicago truncatula ... 42 0.11
gb|CG937763.1|CG937763 MBECV65TR mth2 Medicago truncatula g... 40 0.43
gb|CG946601.1|CG946601 MBEEE26TR mth2 Medicago truncatula g... 40 0.43
emb|CR314499.1| mte1-38O21FM1 BAC end, cultivar Jemalong A1... 40 0.43
gb|BE204599.1|BE204599 EST397275 KV0 Medicago truncatula cD... 40 0.43
gb|AL381349.1|AL381349 MtBC019E03R1 MtBC Medicago truncatul... 40 0.43
gb|CX534988.1|CX534988 s13dNF28A09MJ069_388159 Methyl Jasmo... 40 0.43
>gb|AW774471.1|AW774471 EST333622 KV3 Medicago truncatula cDNA clone pKV3-22N3, mRNA sequence
Length = 646
Score = 85.7 bits (43), Expect = 8e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 1090 acataagcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttc 1149
|||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 318 acataagcaacagctgcaaagtgcatcacagcatcaaacttattctccgaaaatatttta 259
Query: 1150 ttcacagctttggcatcgcctaagtcagcataaataaactgaagccttccgggtt 1204
| |||| ||| ||||| || |||||||||| ||||| ||||| ||||| ||||
Sbjct: 258 tcaacagattttgcatctcccaagtcagcatgtataaattgaagtcttccaggtt 204
Score = 61.9 bits (31), Expect = 1e-007
Identities = 109/135 (80%)
Strand = Plus / Minus
Query: 855 ttttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgat 914
||||| |||||| | |||||| || || ||||||||||| || || ||||||||||||||
Sbjct: 553 ttttgaaaaatcaaggatgatatcttctgccatcttcttagcttttccatatggattgat 494
Query: 915 aggattctgaggagttgtttctacaataggcatcgtatcaggttcaccataggttgcaca 974
||| ||||| ||| |||| ||| |||||| | |||||||| ||||| ||||||||
Sbjct: 493 aggtttctgttctgtttcttctgtaattggcatcttttcaggttccccatatgttgcaca 434
Query: 975 cgtactcgagtaaat 989
||||| || |||||
Sbjct: 433 tgtacttgaataaat 419
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 790 gggtctgatccaatcacgttgaagtatctta 820
||||||||||||||||| ||||| |||||||
Sbjct: 609 gggtctgatccaatcacattgaaatatctta 579
>gb|BE942980.1|BE942980 EST422559 MGHG Medicago truncatula cDNA clone pMGHG-14M15, mRNA
sequence
Length = 461
Score = 85.7 bits (43), Expect = 8e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 1090 acataagcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttc 1149
|||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 244 acataagcaacagctgcaaagtgcatcacagcatcaaacttattctccgaaaatatttta 185
Query: 1150 ttcacagctttggcatcgcctaagtcagcataaataaactgaagccttccgggtt 1204
| |||| ||| ||||| || |||||||||| ||||| ||||| ||||| ||||
Sbjct: 184 tcaacagattttgcatctcccaagtcagcatgtataaattgaagtcttccaggtt 130
Score = 54.0 bits (27), Expect = 3e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 883 gccatcttctttgccttaccatatggattgataggattctgaggagttgtttctacaata 942
||||||||||| || || ||||||||||||||||| ||||| ||| |||| |||
Sbjct: 451 gccatcttcttagcttttccatatggattgataggtttctgttctgtttcttctgtaatt 392
Query: 943 ggcatcgtatcaggttcaccataggttgcacacgtactcgagtaaat 989
|||||| | |||||||| ||||| |||||||| ||||| || |||||
Sbjct: 391 ggcatcttttcaggttccccatatgttgcacatgtacttgaataaat 345
>gb|BI308597.1|BI308597 EST530007 GPOD Medicago truncatula cDNA clone pGPOD-7G10 5' end, mRNA
sequence
Length = 698
Score = 85.7 bits (43), Expect = 8e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 1090 acataagcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttc 1149
|||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 643 acataagcaacagctgcaaagtgcatcacagcatcaaacttattctccgaaaatatttta 584
Query: 1150 ttcacagctttggcatcgcctaagtcagcataaataaactgaagccttccgggtt 1204
| |||| ||| ||||| || |||||||||| ||||| ||||| ||||| ||||
Sbjct: 583 tcaacagattttgcatctcccaagtcagcatgtataaattgaagtcttccaggtt 529
>gb|DW018960.1|DW018960 EST1227921 MTY Medicago truncatula cDNA clone MTYBD07, mRNA sequence
Length = 741
Score = 85.7 bits (43), Expect = 8e-015
Identities = 97/115 (84%)
Strand = Plus / Minus
Query: 1090 acataagcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttc 1149
|||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 709 acataagcaacagctgcaaagtgcatcacagcatcaaacttattctccgaaaatatttta 650
Query: 1150 ttcacagctttggcatcgcctaagtcagcataaataaactgaagccttccgggtt 1204
| |||| ||| ||||| || |||||||||| ||||| ||||| ||||| ||||
Sbjct: 649 tcaacagattttgcatctcccaagtcagcatgtataaattgaagtcttccaggtt 595
>gb|AW695791.1|AW695791 NF098F03ST1F1029 Developing stem Medicago truncatula cDNA clone
NF098F03ST 5', mRNA sequence
Length = 660
Score = 69.9 bits (35), Expect = 5e-010
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 870 gatgatgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagt 929
|||||| ||||| ||||||||||| || |||||||||||||| || ||| ||| || ||
Sbjct: 294 gatgatatcctctgccatcttcttggctttaccatatggattaattggaacctgcggtgt 235
Query: 930 tgtttctacaataggcatcgtatcaggttcaccataggttgcacacgtact 980
| |||| |||||||||| | |||||||| ||||| |||||||| |||||
Sbjct: 234 tacttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 184
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatat 1145
|||||||||||||||||||| || || |||||| ||||||| |||||||
Sbjct: 68 gcaacagcagcaaagtgcatcacggcatcaaatttattctccaaaaatat 19
Score = 50.1 bits (25), Expect = 4e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 600 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 541
Query: 616 acaagatctgtgacatc 632
|| |||||||| |||||
Sbjct: 540 accagatctgttacatc 524
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 790 gggtctgatccaatcacgttgaagtatct 818
||||| ||||||||||| |||||||||||
Sbjct: 365 gggtcagatccaatcacattgaagtatct 337
>gb|BE316206.2|BE316206 NF030F03LF1F1027 Developing leaf Medicago truncatula cDNA clone
NF030F03LF 5', mRNA sequence
Length = 355
Score = 69.9 bits (35), Expect = 5e-010
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 870 gatgatgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagt 929
|||||| ||||| ||||||||||| || |||||||||||||| || ||| ||| || ||
Sbjct: 222 gatgatatcctctgccatcttcttggctttaccatatggattaattggaacctgcggtgt 163
Query: 930 tgtttctacaataggcatcgtatcaggttcaccataggttgcacacgtact 980
| |||| |||||||||| | |||||||| ||||| |||||||| |||||
Sbjct: 162 tacttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 112
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 790 gggtctgatccaatcacgttgaagtatct 818
||||| ||||||||||| |||||||||||
Sbjct: 293 gggtcagatccaatcacattgaagtatct 265
>gb|BG582283.1|BG582283 EST484024 GVN Medicago truncatula cDNA clone pGVN-69A4 5' end, mRNA
sequence
Length = 388
Score = 69.9 bits (35), Expect = 5e-010
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||||||||||||||| || || |||||| ||||||| ||||||| || || ||
Sbjct: 238 gcaacagcagcaaagtgcatcacggcatcaaatttattctccaaaaatatcttattaacc 179
Query: 1156 gctttggcatcgcctaagtcagcataaataaactgaagccttccgggttct 1206
| ||| ||| || |||||||| || ||||| ||||||||||||||||||
Sbjct: 178 gattttttatctcccaagtcagcgtatataaattgaagccttccgggttct 128
>gb|BI271915.1|BI271915 NF016C03FL1F1021 Developing flower Medicago truncatula cDNA clone
NF016C03FL 5', mRNA sequence
Length = 364
Score = 69.9 bits (35), Expect = 5e-010
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||||||||||||||| || || |||||| ||||||| ||||||| || || ||
Sbjct: 204 gcaacagcagcaaagtgcatcacggcatcaaatttattctccaaaaatatcttattaacc 145
Query: 1156 gctttggcatcgcctaagtcagcataaataaactgaagccttccgggttct 1206
| ||| ||| || |||||||| || ||||| ||||||||||||||||||
Sbjct: 144 gattttttatctcccaagtcagcgtatataaattgaagccttccgggttct 94
>gb|BI272466.1|BI272466 NF021H08FL1F1075 Developing flower Medicago truncatula cDNA clone
NF021H08FL 5', mRNA sequence
Length = 713
Score = 69.9 bits (35), Expect = 5e-010
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||||||||||||||| || || |||||| ||||||| ||||||| || || ||
Sbjct: 335 gcaacagcagcaaagtgcatcacggcatcaaatttattctccaaaaatatcttattaacc 276
Query: 1156 gctttggcatcgcctaagtcagcataaataaactgaagccttccgggttct 1206
| ||| ||| || |||||||| || ||||| ||||||||||||||||||
Sbjct: 275 gattttttatctcccaagtcagcgtatataaattgaagccttccgggttct 225
Score = 63.9 bits (32), Expect = 3e-008
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 870 gatgatgtcctccgccatcttctttgccttaccatatggattgataggattctgaggagt 929
|||||| ||||| ||||||||||| || |||||||||||||| || ||| || || ||
Sbjct: 561 gatgatatcctctgccatcttcttggctttaccatatggattaattggaacntgcggtgt 502
Query: 930 tgtttctacaataggcatcgtatcaggttcaccataggttgcacacgtact 980
| |||| |||||||||| | |||||||| ||||| |||||||| |||||
Sbjct: 501 tacttctgtaataggcatcttttcaggttccccatatgttgcacatgtact 451
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 790 gggtctgatccaatcacgttgaagtatct 818
||||| ||||||||||| |||||||||||
Sbjct: 632 gggtcagatccaatcacattgaagtatct 604
>gb|CX527137.1|CX527137 s13dNF40D04AT042_514786 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 617
Score = 69.9 bits (35), Expect = 5e-010
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatattttcttcaca 1155
|||||||||||||||||||| || || |||||| ||||||| ||||||| || || ||
Sbjct: 445 gcaacagcagcaaagtgcatcacggcatcaaatttattctccaaaaatatcttattaacc 386
Query: 1156 gctttggcatcgcctaagtcagcataaataaactgaagccttccgggttct 1206
| ||| ||| || |||||||| || ||||| ||||||||||||||||||
Sbjct: 385 gattttttatctcccaagtcagcgtatataaattgaagccttccgggttct 335
>gb|BE943067.1|BE943067 EST422646 MGHG Medicago truncatula cDNA clone pMGHG-14N21, mRNA
sequence
Length = 433
Score = 61.9 bits (31), Expect = 1e-007
Identities = 109/135 (80%)
Strand = Plus / Minus
Query: 855 ttttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgat 914
||||| |||||| | |||||| || || ||||||||||| || || ||||||||||||||
Sbjct: 228 ttttgaaaaatcaaggatgatatcttctgccatcttcttagcttttccatatggattgat 169
Query: 915 aggattctgaggagttgtttctacaataggcatcgtatcaggttcaccataggttgcaca 974
||| ||||| ||| |||| ||| |||||| | |||||||| ||||| ||||||||
Sbjct: 168 aggtttctgttctgtttcttctgtaattggcatcttttcaggttccccatatgttgcaca 109
Query: 975 cgtactcgagtaaat 989
||||| || |||||
Sbjct: 108 tgtacttgaataaat 94
Score = 52.0 bits (26), Expect = 1e-004
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagc 770
||||||||||||||| ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct: 363 agctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctcaggtcttggtgc 304
Query: 771 ttctcctagccgtccctctgggtctgatccaatcacgttgaagtatctta 820
|| |||| | || || ||||||||||||||||| ||||| |||||||
Sbjct: 303 ctcacctaatctcccttcagggtctgatccaatcacattgaaatatctta 254
>gb|BG647065.1|BG647065 EST508684 HOGA Medicago truncatula cDNA clone pHOGA-15H17 5' end,
mRNA sequence
Length = 713
Score = 61.9 bits (31), Expect = 1e-007
Identities = 109/135 (80%)
Strand = Plus / Minus
Query: 855 ttttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgat 914
||||| |||||| | |||||| || || ||||||||||| || || ||||||||||||||
Sbjct: 222 ttttgaaaaatcaaggatgatatcttctgccatcttcttagcttttccatatggattgat 163
Query: 915 aggattctgaggagttgtttctacaataggcatcgtatcaggttcaccataggttgcaca 974
||| ||||| ||| |||| ||| |||||| | |||||||| ||||| ||||||||
Sbjct: 162 aggtttctgttctgtttcttctgtaattggcatcttttcaggttccccatatgttgcaca 103
Query: 975 cgtactcgagtaaat 989
||||| || |||||
Sbjct: 102 tgtacttgaataaat 88
Score = 52.0 bits (26), Expect = 1e-004
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagc 770
||||||||||||||| ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct: 357 agctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctcaggtcttggtgc 298
Query: 771 ttctcctagccgtccctctgggtctgatccaatcacgttgaagtatctta 820
|| |||| | || || ||||||||||||||||| ||||| |||||||
Sbjct: 297 ctcacctaatctcccttcagggtctgatccaatcacattgaaatatctta 248
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 512 acattgtagatgcctactttaccaggctttgccttttcaagagctttgacatgggcatca 453
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 452 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 409
>gb|BG646934.1|BG646934 EST508553 HOGA Medicago truncatula cDNA clone pHOGA-15O23 5' end,
mRNA sequence
Length = 775
Score = 58.0 bits (29), Expect = 2e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 855 ttttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgat 914
||||| |||||| | |||||| || || ||||||||||| || || ||||||||||||||
Sbjct: 195 ttttgaaaaatcaaggatgatatcttctgccatcttcttagcttttccatatggattgat 136
Query: 915 aggattctg 923
||| |||||
Sbjct: 135 aggtttctg 127
Score = 52.0 bits (26), Expect = 1e-004
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagc 770
||||||||||||||| ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct: 330 agctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctcaggtcttggtgc 271
Query: 771 ttctcctagccgtccctctgggtctgatccaatcacgttgaagtatctta 820
|| |||| | || || ||||||||||||||||| ||||| |||||||
Sbjct: 270 ctcacctaatctcccttcagggtctgatccaatcacattgaaatatctta 221
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 485 acattgtagatgcctactttaccaggctttgccttttcaagagctttgacatgggcatca 426
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 425 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 382
>gb|CG921448.1|CG921448 MBEMN29TR mth2 Medicago truncatula genomic clone 3E10, DNA sequence
Length = 959
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 124 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 183
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 184 accagatctgttacatcaatataatctcgtatgcaagttccatc 227
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 790 gggtctgatccaatcacgttgaagtatct 818
||||| ||||||||||| |||||||||||
Sbjct: 907 gggtcagatccaatcacattgaagtatct 935
>gb|CG923927.1|CG923927 MBEHQ63TF mth2 Medicago truncatula genomic clone 58K5, DNA sequence
Length = 880
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 129 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 188
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 189 accagatctgttacatcaatataatctcgtatgcaagttccatc 232
>gb|CG925142.1|CG925142 MBEND93TF mth2 Medicago truncatula genomic clone 6P18, DNA sequence
Length = 807
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 127 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 186
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 187 accagatctgttacatcaatataatctcgtatgcaagttccatc 230
>gb|CG927378.1|CG927378 MBECD24TF mth2 Medicago truncatula genomic clone 24D24, DNA
sequence
Length = 821
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 129 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 188
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 189 accagatctgttacatcaatataatctcgtatgcaagttccatc 232
>gb|CG961162.1|CG961162 MBELL07TR mth2 Medicago truncatula genomic clone 80B14, DNA
sequence
Length = 906
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 123 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 182
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 183 accagatctgttacatcaatataatctcgtatgcaagttccatc 226
>gb|CG971190.1|CG971190 MBEDU72TRC mth2 Medicago truncatula genomic clone 35K23, DNA
sequence
Length = 932
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 124 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 183
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 184 accagatctgttacatcaatataatctcgtatgcaagttccatc 227
>emb|CR481986.1| mth2-145L11RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 564
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 128 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 187
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 188 accagatctgttacatcaatataatctcgtatgcaagttccatc 231
>gb|AW691884.1|AW691884 NF045B08ST1F1000 Developing stem Medicago truncatula cDNA clone
NF045B08ST 5', mRNA sequence
Length = 660
Score = 56.0 bits (28), Expect = 7e-006
Identities = 92/112 (82%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattct-ccgaaaatattttcttcac 1154
|||||||||||||||||||| || || |||||| ||||| || ||||||| || || ||
Sbjct: 637 gcaacagcagcaaagtgcatcacggcatcaaatttattcttccaaaaatatcttattaac 578
Query: 1155 agctttggcatcgcctaagtcagcataaataaactgaagccttccgggttct 1206
| ||| ||| || |||||||| || ||||| ||||||||||||||||||
Sbjct: 577 cgattttttatctcccaagtcagcgtatataaattgaagccttccgggttct 526
>gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete sequence
Length = 116075
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||||||||| || ||||| || || |||||||||| |||||||||||
Sbjct: 17753 acattgtagattccaaccttagctggcactgccttttcaagagctttcacgtgagcatca 17812
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|| |||||||| ||||| || || |||| | ||||||||||||
Sbjct: 17813 accagatctgttacatcaatataatctcgtatgcaagttccatc 17856
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatat 1145
|||||||||||||||||||| || || |||||| ||||||| |||||||
Sbjct: 19171 gcaacagcagcaaagtgcatcacggcatcaaatttattctccaaaaatat 19220
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 870 gatgatgtcctccgccatcttctttgccttaccatatggatt 911
|||||| ||||| ||||||||||| || ||||||||||||||
Sbjct: 18773 gatgatatcctctgccatcttcttggctttaccatatggatt 18814
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1171 aagtcagcataaataaactgaagccttccgggttct 1206
|||||||| || ||||| ||||||||||||||||||
Sbjct: 19352 aagtcagcgtatataaattgaagccttccgggttct 19387
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 790 gggtctgatccaatcacgttgaagtatct 818
||||| ||||||||||| |||||||||||
Sbjct: 18536 gggtcagatccaatcacattgaagtatct 18564
>gb|AW697303.1|AW697303 NF115B10ST1F1080 Developing stem Medicago truncatula cDNA clone
NF115B10ST 5', mRNA sequence
Length = 653
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1096 gcaacagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatat 1145
|||||||||||||||||||| || || |||||| ||||||| |||||||
Sbjct: 510 gcaacagcagcaaagtgcatcacggcatcaaatttattctccaaaaatat 461
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1171 aagtcagcataaataaactgaagccttccgggttct 1206
|||||||| || ||||| ||||||||||||||||||
Sbjct: 329 aagtcagcgtatataaattgaagccttccgggttct 294
>gb|BF519331.1|BF519331 EST456793 DSIL Medicago truncatula cDNA clone pDSIL-20K16, mRNA
sequence
Length = 498
Score = 52.0 bits (26), Expect = 1e-004
Identities = 89/110 (80%)
Strand = Plus / Minus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagc 770
||||||||||||||| ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct: 140 agctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctcaggtcttggtgc 81
Query: 771 ttctcctagccgtccctctgggtctgatccaatcacgttgaagtatctta 820
|| |||| | || || ||||||||||||||||| ||||| |||||||
Sbjct: 80 ctcacctaatctcccttcagggtctgatccaatcacattgaaatatctta 31
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 295 acattgtagatgcctactttaccaggctttgccttttcaagagctttgacatgggcatca 236
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 235 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 192
>gb|CB891142.1|CB891142 EST648111 KV3 Medicago truncatula cDNA clone KV3-49E16, mRNA
sequence
Length = 711
Score = 52.0 bits (26), Expect = 1e-004
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 711 agctgcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagc 770
||||||||||||||| ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct: 543 agctgcatcaaagcaggcacctgaaatacgaccatgttcccgaagctcaggtcttggtgc 602
Query: 771 ttctcctagccgtccctctgggtctgatccaatcacgttgaagtatctta 820
|| |||| | || || ||||||||||||||||| ||||| |||||||
Sbjct: 603 ctcacctaatctcccttcagggtctgatccaatcacattgaaatatctta 652
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 388 acattgtagatgcctactttaccaggctttgccttttcaagagctttgacatgggcatca 447
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 448 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 491
>gb|AL377539.1|AL377539 MtBB32C08F1 MtBB Medicago truncatula cDNA clone MtBB32C08 T3, mRNA
sequence
Length = 477
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 502 gccttcttgcaagcttctacaaactcagtcactgatctaccttggcctgttccgacattg 561
||||| || |||||||| |||||||| ||||||| ||||| | || || || ||||||
Sbjct: 102 gcctttttacaagcttcaacaaactccttcactgaactaccctttccagtgccaacattg 43
Query: 562 tagattccaac 572
|||||||||||
Sbjct: 42 tagattccaac 32
>gb|AW574031.1|AW574031 EST316622 GVN Medicago truncatula cDNA clone pGVN-50L10, mRNA
sequence
Length = 699
Score = 44.1 bits (22), Expect = 0.027
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 1131 attctccgaaaatattttcttcacagctttggcatcgcctaagtcagcataaataaactg 1190
||||||||||||||||| | |||| ||| ||||| || |||||||||| ||||| ||
Sbjct: 688 attctccgaaaatatttaatcaacagattttgcatctcccaagtcagcatgtataaattg 629
Query: 1191 aagccttccgggtt 1204
||| ||||| ||||
Sbjct: 628 aagtcttccaggtt 615
>gb|AJ497814.1|AJ497814 AJ497814 MTFLOW Medicago truncatula cDNA clone mt--abc955114f11,
mRNA sequence
Length = 307
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 790 gggtctgatccaatcacgttgaagtatct 818
||||| ||||||||||| |||||||||||
Sbjct: 56 gggtcagatccaatcacattgaagtatct 28
>gb|CG937763.1|CG937763 MBECV65TR mth2 Medicago truncatula genomic clone 29K10, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 606 acattgtagatgcctactttaccaggctttgccttttcaagagctttgacatgggcatca 547
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 546 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 503
>gb|CG946601.1|CG946601 MBEEE26TR mth2 Medicago truncatula genomic clone 37E3, DNA sequence
Length = 851
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 643 acattgtagatgcctactttaccaggctttgccttttcaagagctttgacatgggcatca 584
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 583 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 540
>emb|CR314499.1| mte1-38O21FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 atgaaactaatcaaggaaca 122
||||||||||||||||||||
Sbjct: 231 atgaaactaatcaaggaaca 250
>gb|BE204599.1|BE204599 EST397275 KV0 Medicago truncatula cDNA clone pKV0-16F14, mRNA
sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1183 ataaactgaagccttccgggttct 1206
||||| ||||||||||||||||||
Sbjct: 524 ataaattgaagccttccgggttct 501
>gb|AL381349.1|AL381349 MtBC019E03R1 MtBC Medicago truncatula cDNA clone MtBC019E0 T7, mRNA
sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 115 acattgtagatgcctactttaccaggcttggccttttcaagagctttgacatgggcatca 56
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 55 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 12
>gb|CX534988.1|CX534988 s13dNF28A09MJ069_388159 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.43
Identities = 83/104 (79%)
Strand = Plus / Plus
Query: 556 acattgtagattccaactttgcctggctgagctttaccaagagcttttacgtgagcatct 615
||||||||||| || ||||| || |||| || || |||||||||| || || |||||
Sbjct: 411 acattgtagatgcctactttaccaggctttgccttttcaagagctttgacatgggcatca 470
Query: 616 acaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
|||||||| || ||||| || || |||| || ||| ||||||||
Sbjct: 471 acaagatcggtaacatcaatataatctcgaatgcatgttccatc 514
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 304,856
Number of Sequences: 392609
Number of extensions: 304856
Number of successful extensions: 23249
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23146
Number of HSP's gapped (non-prelim): 94
length of query: 1214
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1194
effective length of database: 433,880,813
effective search space: 518053690722
effective search space used: 518053690722
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)