BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX528962.1|CX528962 s13dNF10H09MJ076_243984 Methyl Jasmo... 206 2e-051
gb|BF518853.1|BF518853 EST456309 DSIL Medicago truncatula c... 188 6e-046
gb|BF631862.1|BF631862 NF025F04DT1F1032 Drought Medicago tr... 174 9e-042
gb|CX523990.1|CX523990 s13dNF12D02AT014_447324 Aphid-Infect... 165 8e-039
gb|AW687343.2|AW687343 NF008F02RT1F1025 Developing root Med... 145 8e-033
gb|BE324374.2|BE324374 NF015G01PL1F1005 Phosphate starved l... 139 5e-031
gb|AL365525.1|AL365525 MtBA01A02F3 MtBA Medicago truncatula... 123 3e-026
gb|AL370137.1|AL370137 MtBA36A02F1 MtBA Medicago truncatula... 123 3e-026
gb|BI311684.1|BI311684 EST5313434 GESD Medicago truncatula ... 123 3e-026
gb|AC155101.19| Medicago truncatula clone mth2-139j13, comp... 123 3e-026
gb|BG448185.1|BG448185 NF107A01EC1F1003 Elicited cell cultu... 101 1e-019
gb|AL365526.1|AL365526 MtBA01A02R3 MtBA Medicago truncatula... 44 0.021
gb|AL370138.1|AL370138 MtBA36A02R1 MtBA Medicago truncatula... 44 0.021
gb|BF519079.1|BF519079 EST456539 DSIL Medicago truncatula c... 42 0.082
gb|BI308637.1|BI308637 EST530047 GPOD Medicago truncatula c... 42 0.082
gb|BQ154720.1|BQ154720 NF099G01IR1F1008 Irradiated Medicago... 42 0.082
gb|BQ165647.1|BQ165647 EST611516 KVKC Medicago truncatula c... 42 0.082
gb|CA922013.1|CA922013 EST639731 MTUS Medicago truncatula c... 42 0.082
gb|CA990471.1|CA990471 EST643979 GESD Medicago truncatula c... 42 0.082
gb|CA990480.1|CA990480 EST643988 GESD Medicago truncatula c... 42 0.082
gb|CX523674.1|CX523674 s13dNF02F03AT029_322732 Aphid-Infect... 42 0.082
gb|AC137820.11| Medicago truncatula clone mth2-15f9, comple... 42 0.082
gb|BE323225.2|BE323225 NF004A06PL1F1037 Phosphate starved l... 40 0.32
gb|CA917813.1|CA917813 EST641960 GPOD Medicago truncatula c... 40 0.32
gb|CX539370.1|CX539370 s13dNF70B11GS089_462000 Germinating ... 40 0.32
>gb|CX528962.1|CX528962 s13dNF10H09MJ076_243984 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 611
Score = 206 bits (104), Expect = 2e-051
Identities = 315/384 (82%), Gaps = 1/384 (0%)
Strand = Plus / Minus
Query: 490 atgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaac 549
||||| ||||| |||||||| |||||||| ||||| | ||||| | ||||| |||||
Sbjct: 603 atgaatccaaatgcatattcaccaacacgtggatgtcgaatgatagctacttctttgaag 544
Query: 550 gcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagata 609
|| ||| || |||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct: 543 gcttgtgaattttgatctggtgatatagcagcactaatttgcttagaggcattatagata 484
Query: 610 tgacgaacaagaggcatgcgcttaataatccactcgcc-aaggctaaggacagatgcccc 668
||||||||||||||||| ||||| |||| |||||| || ||| | ||||||||||| ||
Sbjct: 483 tgacgaacaagaggcattcgcttgataaaccactccccnaagtcccaggacagatgcacc 424
Query: 669 aagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgacaaagcc 728
||||| |||||||| || || || | ||| || ||||| || | || || | || ||
Sbjct: 423 cagccatgatgacatgaaaaccccaaccaagaagatgaaggttatggaagttatgaatcc 364
Query: 729 aagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaa 788
|||||| || |||| |||||| |||||||||||||||||||| || |||||||| || ||
Sbjct: 363 aagaccaaagatgtcgattccaagttgagcatagattggagaaaaaaatccatccacgaa 304
Query: 789 atgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatcc 848
||||||||||||||| || |||||||| || ||||| || || | ||||| ||||||||
Sbjct: 303 atgaatgaaccaccatgttatgtagaaggtgattgcaattggaagaagaatgacacatcc 244
Query: 849 agtcatgaacttctttgaagccca 872
||||||||| || ||||| |||||
Sbjct: 243 agtcatgaatttttttgatgccca 220
>gb|BF518853.1|BF518853 EST456309 DSIL Medicago truncatula cDNA clone pDSIL-19A5, mRNA
sequence
Length = 401
Score = 188 bits (95), Expect = 6e-046
Identities = 257/311 (82%)
Strand = Plus / Minus
Query: 562 tgatctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaaga 621
|||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 369 tgatctggtgatatagcagcactaatttgcttagaggcattatagatatgacgaacaaga 310
Query: 622 ggcatgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgac 681
||||| ||||| |||| || ||| || || || ||||||||||| | ||||| ||||||
Sbjct: 309 ggcattcgcttgataaacctctcccctagtctcaggacagatgcatccagccatgatgac 250
Query: 682 ataaagactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagaccgaatatg 741
|| || | || | ||| || ||||| || | || || | || |||||||| || |||
Sbjct: 249 atgaaatccccaaccaagaagatgaaggttatggaagttatgaatccaagaccaaagatg 190
Query: 742 ttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaaccac 801
| |||||| |||||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct: 189 tcgattccaagttgagcatagattggagaaaaaaatccatccacgaaatgaatgaaccac 130
Query: 802 caggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatgaacttc 861
|| || |||||||| || ||||| || || | ||||| ||||||||||||||||| ||
Sbjct: 129 catgttatgtagaaggtgattgcaattggaagaagaatgacacatccagtcatgaatttt 70
Query: 862 tttgaagccca 872
||||| |||||
Sbjct: 69 tttgatgccca 59
>gb|BF631862.1|BF631862 NF025F04DT1F1032 Drought Medicago truncatula cDNA clone NF025F04DT
5', mRNA sequence
Length = 643
Score = 174 bits (88), Expect = 9e-042
Identities = 257/312 (82%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 562 tgatctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaaga 621
|||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 539 tgatctggtgatatcgcagcactaatctgcttagaagcattatagatatgacgaacaaga 480
Query: 622 ggcatgcgcttaataat-ccactcgccaaggctaaggacagatgccccaagccaagatga 680
||||| | ||| |||| |||||| ||||| | ||||||||||| || | ||| |||||
Sbjct: 479 ggcattctcttgataagaccactccccaagtcccaggacagatgcacccaaccatgatga 420
Query: 681 cataaagactccgatcaaaaatatgaaagtaacagatgtgacaaagccaagaccgaatat 740
||| || | |||||||| || ||||| || | || || | || |||||||| || ||
Sbjct: 419 catgaaaatcccgatcaagaagatgaaggttatggaagttatgaacccaagaccaaagat 360
Query: 741 gttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaacca 800
|||||||| || ||| ||||||| ||||| || || ||||| |||||||||||||||||
Sbjct: 359 attgattccaagatgaacatagatcggagaaaaaaacccatccacaaaatgaatgaacca 300
Query: 801 ccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatgaactt 860
|||||| |||||||| || ||||| || || || ||||| |||||||| |||||||||||
Sbjct: 299 ccaggtaatgtagaaggtgattgcaattggaaaaagaatgacacatccggtcatgaactt 240
Query: 861 ctttgaagccca 872
||||| |||||
Sbjct: 239 ttttgatgccca 228
>gb|CX523990.1|CX523990 s13dNF12D02AT014_447324 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 543
Score = 165 bits (83), Expect = 8e-039
Identities = 227/275 (82%)
Strand = Plus / Minus
Query: 598 gcattgtagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaagg 657
||||| ||||||||||||||||||||||| ||||| |||| |||||| ||||| | |||
Sbjct: 538 gcattatagatatgacgaacaagaggcattcgcttgataaaccactccccaagtcccagg 479
Query: 658 acagatgccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagat 717
|||||||| || ||||| |||||||| || || || | ||| || ||||| || | ||
Sbjct: 478 acagatgcacccagccatgatgacatgaaaaccccaaccaagaagatgaaggttatggaa 419
Query: 718 gtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaat 777
|| | || |||||||| || |||| |||||| |||||||||||||||||||| || |||
Sbjct: 418 gttatgaatccaagaccaaagatgtcgattccaagttgagcatagattggagaaaaaaat 359
Query: 778 ccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagaga 837
||||| || ||||||||||||||||| || |||||||| || ||||| || || | |||
Sbjct: 358 ccatccacgaaatgaatgaaccaccatgttatgtagaaggtgattgcaattggaagaaga 299
Query: 838 attacacatccagtcatgaacttctttgaagccca 872
|| ||||||||||||||||| || ||||| |||||
Sbjct: 298 atgacacatccagtcatgaatttttttgatgccca 264
>gb|AW687343.2|AW687343 NF008F02RT1F1025 Developing root Medicago truncatula cDNA clone
NF008F02RT 5', mRNA sequence
Length = 346
Score = 145 bits (73), Expect = 8e-033
Identities = 220/269 (81%)
Strand = Plus / Minus
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||||||||||||||||||||| | ||| |||| |||||| ||||| | |||||||||
Sbjct: 346 tagatatgacgaacaagaggcattctcttgataaaccactccccaagtcataggacagat 287
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
|| || | ||| |||||||| || | |||||||| || ||||| || | || || |
Sbjct: 286 gcacccaaccatgatgacatgaaaatcccgatcaagaagatgaaggttatggaagttatg 227
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| |||||||| || || |||||||| || ||| ||||||| ||||| || || |||||
Sbjct: 226 aacccaagaccaaagatattgattccaagatgaacatagatcggagaaaaaaacccatcc 167
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||||||||||||||||||||| |||||||| || ||||| || || || ||||| |||
Sbjct: 166 acaaaatgaatgaaccaccaggtaatgtagaaggtgattgcaattggaaaaagaatgaca 107
Query: 844 catccagtcatgaacttctttgaagccca 872
||||| ||||||||||| ||||| |||||
Sbjct: 106 catccggtcatgaacttttttgatgccca 78
>gb|BE324374.2|BE324374 NF015G01PL1F1005 Phosphate starved leaf Medicago truncatula cDNA
clone NF015G01PL 5', mRNA sequence
Length = 346
Score = 139 bits (70), Expect = 5e-031
Identities = 163/194 (84%)
Strand = Plus / Minus
Query: 490 atgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaac 549
||||| ||||| |||||||| |||||||| ||||| | ||||| | ||||| |||||
Sbjct: 217 atgaatccaaatgcatattcaccaacacgtggatgtcgaatgatagctacttctttgaag 158
Query: 550 gcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagata 609
|| ||| || |||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct: 157 gcttgtgaattttgatctggtgatatagcagcactaatttgcttagaggcattatagata 98
Query: 610 tgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgcccca 669
||||||||||||||||| ||||| |||| |||||| ||||| | ||||||||||| ||
Sbjct: 97 tgacgaacaagaggcattcgcttgataaaccactccccaagtcccaggacagatgcaccc 38
Query: 670 agccaagatgacat 683
||||| ||||||||
Sbjct: 37 agccatgatgacat 24
>gb|AL365525.1|AL365525 MtBA01A02F3 MtBA Medicago truncatula cDNA clone MtBA01A02 T3, mRNA
sequence
Length = 491
Score = 123 bits (62), Expect = 3e-026
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 727 ccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaaca 786
|||||||| || |||| |||||| |||||||||||||||||||| || |||||||| ||
Sbjct: 404 ccaagaccaaagatgtcgattccaagttgagcatagattggagaaaaaaatccatccacg 345
Query: 787 aaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacat 846
||||||||||||||||| || |||||||| || ||||| || || | ||||| ||||||
Sbjct: 344 aaatgaatgaaccaccatgttatgtagaaggtgattgcaattggaagaagaatgacacat 285
Query: 847 ccagtcatgaacttctttgaagccca 872
||||||||||| || ||||| |||||
Sbjct: 284 ccagtcatgaatttttttgatgccca 259
>gb|AL370137.1|AL370137 MtBA36A02F1 MtBA Medicago truncatula cDNA clone MtBA36A02 T3, mRNA
sequence
Length = 422
Score = 123 bits (62), Expect = 3e-026
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 727 ccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatcaaca 786
|||||||| || |||| |||||| |||||||||||||||||||| || |||||||| ||
Sbjct: 404 ccaagaccaaagatgtcgattccaagttgagcatagattggagaaaaaaatccatccacg 345
Query: 787 aaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattacacat 846
||||||||||||||||| || |||||||| || ||||| || || | ||||| ||||||
Sbjct: 344 aaatgaatgaaccaccatgttatgtagaaggtgattgcaattggaagaagaatgacacat 285
Query: 847 ccagtcatgaacttctttgaagccca 872
||||||||||| || ||||| |||||
Sbjct: 284 ccagtcatgaatttttttgatgccca 259
>gb|BI311684.1|BI311684 EST5313434 GESD Medicago truncatula cDNA clone pGESD13J1 5' end,
mRNA sequence
Length = 687
Score = 123 bits (62), Expect = 3e-026
Identities = 296/374 (79%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| ||||| || ||||| || |||||||| || ||||| || || || | ||||||
Sbjct: 431 ggcattgacatgcctccagaaacgacaatttcaattccttcccggactgataagtttggc 372
Query: 370 cttatgacatcctttgaattcaccatgaagatatcaccaatgtaaagatggttcgttggg 429
|| ||||||||||| | || || | || |||||||| || ||||||||||| || ||
Sbjct: 371 ctaatgacatccttggtgttgacgagaaatatatcaccgatataaagatggtttgtggga 312
Query: 430 acatagacgcagtaaagatcttcttgaccagaataactctggagggatactgacgatgtg 489
|||||||| ||| | | || || | ||||||||| |||| ||| || ||||| |||
Sbjct: 311 acatagacacagcataactcctcatctccagaataagtctgaaggacaacagacgaggtg 252
Query: 490 atgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttccttgaac 549
||||| || || |||||||| || ||||| ||||| | |||||| | ||||| |||||
Sbjct: 251 atgaatcccaatgcatattcacctacacgtggatgtcgaatgatggctacttctttgaag 192
Query: 550 gcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattgtagata 609
|| ||| || |||||||||||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 191 gcttgtgaattttgatctggtgatatcgcagcactaatctgcttagaagcattatagata 132
Query: 610 tgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagatgcccca 669
||||||||||||||||| | ||| |||| |||||| ||||| | ||||||||||| ||
Sbjct: 131 tgacgaacaagaggcattctcttgataaaccactccccaagtcccaggacagatgcaccc 72
Query: 670 agccaagatgacat 683
| ||| ||||||||
Sbjct: 71 aaccatgatgacat 58
>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
Length = 124152
Score = 123 bits (62), Expect = 3e-026
Identities = 104/118 (88%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
|||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 107177 ctggtgatatagcagcactaatttgcttagaggcattatagatatgacgaacaagaggca 107236
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| ||||| |||| |||||| ||||| | ||||||||||| || ||||| ||||||||
Sbjct: 107237 ttcgcttgataaaccactccccaagtcccaggacagatgcacccagccatgatgacat 107294
Score = 99.6 bits (50), Expect = 4e-019
Identities = 101/118 (85%)
Strand = Plus / Plus
Query: 566 ctggtgatattgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggca 625
|||||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct: 113712 ctggtgatatcgcagcactaatctgcttagaagcattatagatatgacgaacaagaggca 113771
Query: 626 tgcgcttaataatccactcgccaaggctaaggacagatgccccaagccaagatgacat 683
| | ||| |||| |||||| ||||| | ||||||||||| || | ||| ||||||||
Sbjct: 113772 ttctcttgataaaccactccccaagtcccaggacagatgcacccaaccatgatgacat 113829
Score = 91.7 bits (46), Expect = 1e-016
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 739 atgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaac 798
|||| |||||| |||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct: 107660 atgtcgattccaagttgagcatagattggagaaaaaaatccatccacgaaatgaatgaac 107719
Query: 799 caccaggtgatgtagaacgttattgc 824
||||| || |||||||| || |||||
Sbjct: 107720 caccatgttatgtagaaggtgattgc 107745
Score = 77.8 bits (39), Expect = 1e-012
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 742 ttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaaccac 801
|||||||| || ||| ||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 114342 ttgattccaagatgaacatagatcggagaaaaaaacccatccacaaaatgaatgaaccac 114401
Query: 802 caggtgatgtagaacgttattgc 824
||||| |||||||| || |||||
Sbjct: 114402 caggtaatgtagaaggtgattgc 114424
>gb|BG448185.1|BG448185 NF107A01EC1F1003 Elicited cell culture Medicago truncatula cDNA
clone NF107A01EC 5', mRNA sequence
Length = 362
Score = 101 bits (51), Expect = 1e-019
Identities = 99/115 (86%)
Strand = Plus / Minus
Query: 758 catagattggagagaagaatccatcaacaaaatgaatgaaccaccaggtgatgtagaacg 817
||||||| ||||| || || ||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 348 catagatcggagaaaaaaacccatccacaaaatgaatgaaccaccaggtaatgtagaagg 289
Query: 818 ttattgctatggggaagagaattacacatccagtcatgaacttctttgaagccca 872
| ||||| || || || ||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 288 tgattgcaattggaaaaagaatgacacatccggtcatgaacttttttgatgccca 234
>gb|AL365526.1|AL365526 MtBA01A02R3 MtBA Medicago truncatula cDNA clone MtBA01A02 T7, mRNA
sequence
Length = 519
Score = 44.1 bits (22), Expect = 0.021
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| ||||| || ||||| ||||||||||| || |||||||| || || | |||||
Sbjct: 92 ggcattgacatgcctccagaaacaacaatttcaattccttcacggacggataaggttggc 33
Query: 370 cttatgacatcctt 383
|| |||||||||||
Sbjct: 32 ctaatgacatcctt 19
>gb|AL370138.1|AL370138 MtBA36A02R1 MtBA Medicago truncatula cDNA clone MtBA36A02 T7, mRNA
sequence
Length = 500
Score = 44.1 bits (22), Expect = 0.021
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 310 ggcatcgacataccaccagatacaacaatttcgatgccttcacgcacagaaagatttggc 369
||||| ||||| || ||||| ||||||||||| || |||||||| || || | |||||
Sbjct: 87 ggcattgacatgcctccagaaacaacaatttcaattccttcacggacggataaggttggc 28
Query: 370 cttatgacatcctt 383
|| |||||||||||
Sbjct: 27 ctaatgacatcctt 14
>gb|BF519079.1|BF519079 EST456539 DSIL Medicago truncatula cDNA clone pDSIL-19L9, mRNA
sequence
Length = 651
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 428 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 376
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 230 aagaaaccatcaacaaactgaataaaccacca 199
>gb|BI308637.1|BI308637 EST530047 GPOD Medicago truncatula cDNA clone pGPOD-7O2 5' end,
mRNA sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 623 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 571
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 425 aagaaaccatcaacaaactgaataaaccacca 394
>gb|BQ154720.1|BQ154720 NF099G01IR1F1008 Irradiated Medicago truncatula cDNA clone
NF099G01IR 5', mRNA sequence
Length = 666
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 248 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 196
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 50 aagaaaccatcaacaaactgaataaaccacca 19
>gb|BQ165647.1|BQ165647 EST611516 KVKC Medicago truncatula cDNA clone pKVKC-10G1, mRNA
sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 667 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 615
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 469 aagaaaccatcaacaaactgaataaaccacca 438
>gb|CA922013.1|CA922013 EST639731 MTUS Medicago truncatula cDNA clone MTUS-47E10, mRNA
sequence
Length = 779
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 519 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 571
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 717 aagaaaccatcaacaaactgaataaaccacca 748
>gb|CA990471.1|CA990471 EST643979 GESD Medicago truncatula cDNA clone GESD-28D22, mRNA
sequence
Length = 821
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 504 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 452
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 306 aagaaaccatcaacaaactgaataaaccacca 275
>gb|CA990480.1|CA990480 EST643988 GESD Medicago truncatula cDNA clone GESD-28F22, mRNA
sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 477 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 425
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 279 aagaaaccatcaacaaactgaataaaccacca 248
>gb|CX523674.1|CX523674 s13dNF02F03AT029_322732 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 692
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 543 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 595
>gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete sequence
Length = 134674
Score = 42.1 bits (21), Expect = 0.082
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 574 attgcagcactaatttgcttcgatgcattgtagatatgacgaacaagaggcat 626
|||||||||||||| ||||| |||||| ||| ||||| | |||||| |||||
Sbjct: 121641 attgcagcactaatctgcttggatgcagagtatatatgtctaacaaggggcat 121693
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 122396 aagaaaccatcaacaaactgaataaaccacca 122427
>gb|BE323225.2|BE323225 NF004A06PL1F1037 Phosphate starved leaf Medicago truncatula cDNA
clone NF004A06PL 5', mRNA sequence
Length = 373
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 325 aagaaaccatcaacaaactgaataaaccacca 294
>gb|CA917813.1|CA917813 EST641960 GPOD Medicago truncatula cDNA clone GPOD-37I6, mRNA
sequence
Length = 432
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 280 aagaaaccatcaacaaactgaataaaccacca 249
>gb|CX539370.1|CX539370 s13dNF70B11GS089_462000 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 772 aagaatccatcaacaaaatgaatgaaccacca 803
||||| ||||||||||| ||||| ||||||||
Sbjct: 475 aagaaaccatcaacaaactgaataaaccacca 444
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 244,229
Number of Sequences: 392609
Number of extensions: 244229
Number of successful extensions: 19070
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18992
Number of HSP's gapped (non-prelim): 74
length of query: 924
length of database: 441,732,993
effective HSP length: 20
effective length of query: 904
effective length of database: 433,880,813
effective search space: 392228254952
effective search space used: 392228254952
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)