BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042304.2.1
(805 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE202645.1|BE202645 EST402667 KV1 Medicago truncatula cD... 98 1e-018
gb|AL388415.1|AL388415 MtBC48D08F1 MtBC Medicago truncatula... 98 1e-018
gb|BF646432.1|BF646432 NF072B12EC1F1096 Elicited cell cultu... 92 9e-017
gb|BI272952.1|BI272952 NF099F04FL1F1042 Developing flower M... 92 9e-017
gb|BQ147474.1|BQ147474 NF040H09FL1F1079 Developing flower M... 84 2e-014
gb|BG647622.1|BG647622 EST509241 HOGA Medicago truncatula c... 78 1e-012
gb|AL378617.1|AL378617 MtBB39D06F1 MtBB Medicago truncatula... 74 2e-011
gb|CA920250.1|CA920250 EST637968 MTUS Medicago truncatula c... 62 8e-008
gb|BG646200.1|BG646200 EST507819 KV3 Medicago truncatula cD... 58 1e-006
gb|BG646201.1|BG646201 EST507820 KV3 Medicago truncatula cD... 58 1e-006
gb|AC152937.21| Medicago truncatula clone mth2-96n6, comple... 56 5e-006
gb|BI312410.1|BI312410 EST5314160 GESD Medicago truncatula ... 52 7e-005
gb|AC147012.23| Medicago truncatula clone mth2-151j16, WORK... 46 0.005
gb|AC174367.2| Medicago truncatula clone mth2-47m8, WORKING... 46 0.005
gb|AC181973.1| Medicago truncatula clone mth2-12f6, WORKING... 46 0.005
gb|AL375748.1|AL375748 MtBB16G07R2 MtBB Medicago truncatula... 42 0.071
gb|AL388416.1|AL388416 MtBC48D08R1 MtBC Medicago truncatula... 42 0.071
gb|BF519221.1|BF519221 EST456683 DSIL Medicago truncatula c... 42 0.071
gb|BQ139639.1|BQ139639 NF022D07PH1F1061 Phoma-infected Medi... 42 0.071
>gb|BE202645.1|BE202645 EST402667 KV1 Medicago truncatula cDNA clone pKV1-2M8, mRNA
sequence
Length = 506
Score = 97.6 bits (49), Expect = 1e-018
Identities = 163/202 (80%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||||||||| |||| ||| ||||| ||||| |||||||| ||||| ||||| || |
Sbjct: 7 tcgttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagacta 66
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
| ||||||||||| || ||||| |||| |||||||| ||| || |||||||| || |
Sbjct: 67 gaagtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaac 126
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || || || ||||| || || || || || || ||||||||||| |||||||| |
Sbjct: 127 atgtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaagg 186
Query: 298 ttgtccaggacaccatcgaccc 319
| ||||| || || ||||||||
Sbjct: 187 tggtccaagaaacaatcgaccc 208
>gb|AL388415.1|AL388415 MtBC48D08F1 MtBC Medicago truncatula cDNA clone MtBC48D08 T3, mRNA
sequence
Length = 489
Score = 97.6 bits (49), Expect = 1e-018
Identities = 163/202 (80%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||||||||| |||| ||| ||||| ||||| |||||||| ||||| ||||| || |
Sbjct: 211 tcgttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagacta 270
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
| ||||||||||| || ||||| |||| |||||||| ||| || |||||||| || |
Sbjct: 271 gaagtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaac 330
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || || || ||||| || || || || || || ||||||||||| |||||||| |
Sbjct: 331 atgtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaagg 390
Query: 298 ttgtccaggacaccatcgaccc 319
| ||||| || || ||||||||
Sbjct: 391 tggtccaagaaacaatcgaccc 412
>gb|BF646432.1|BF646432 NF072B12EC1F1096 Elicited cell culture Medicago truncatula cDNA
clone NF072B12EC 5', mRNA sequence
Length = 637
Score = 91.7 bits (46), Expect = 9e-017
Identities = 151/187 (80%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||||||||| |||| ||| ||||| ||||| |||||||| ||||| ||||| || |
Sbjct: 451 tcgttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagacta 510
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
| ||||||||||| || ||||| |||| |||||||| ||| || |||||||| || |
Sbjct: 511 gaagtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaac 570
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || || || ||||| || || || || || || ||||||||||| |||||||| |
Sbjct: 571 atgtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaagg 630
Query: 298 ttgtcca 304
| |||||
Sbjct: 631 tggtcca 637
>gb|BI272952.1|BI272952 NF099F04FL1F1042 Developing flower Medicago truncatula cDNA clone
NF099F04FL 5', mRNA sequence
Length = 455
Score = 91.7 bits (46), Expect = 9e-017
Identities = 162/202 (80%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||||||||| |||| ||| ||||| ||||| |||||||| ||||| ||||| || |
Sbjct: 59 tcgttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagacta 118
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
| || |||||||| || ||||| |||| |||||||| ||| || |||||||| || |
Sbjct: 119 gaagnttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaac 178
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || || || ||||| || || || || || || ||||||||||| |||||||| |
Sbjct: 179 atgtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaagg 238
Query: 298 ttgtccaggacaccatcgaccc 319
| ||||| || || ||||||||
Sbjct: 239 tggtccaagaaacaatcgaccc 260
>gb|BQ147474.1|BQ147474 NF040H09FL1F1079 Developing flower Medicago truncatula cDNA clone
NF040H09FL 5', mRNA sequence
Length = 682
Score = 83.8 bits (42), Expect = 2e-014
Identities = 163/203 (80%), Gaps = 1/203 (0%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcac-tgangaangagccattgacggtttatggtgatggaaagcaaacc 176
||||||||||||| | ||| ||| ||||| ||||| |||||||| ||||| ||||| ||
Sbjct: 40 tcgttgctcaggcgcctgaggaaggagcctttgacagtttatggggatgggaagcagact 99
Query: 177 aggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgag 236
|| ||||||||||| || ||||| |||| |||||||| ||| || |||||||| ||
Sbjct: 100 agaagtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaa 159
Query: 237 catgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaan 296
||||| || || || ||||| || || || || || || ||||||||||| ||||||||
Sbjct: 160 catgtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaag 219
Query: 297 gttgtccaggacaccatcgaccc 319
|| ||||| || || ||||||||
Sbjct: 220 gtggtccaagaaacaatcgaccc 242
>gb|BG647622.1|BG647622 EST509241 HOGA Medicago truncatula cDNA clone pHOGA-17M16 5' end,
mRNA sequence
Length = 710
Score = 77.8 bits (39), Expect = 1e-012
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||||||||| |||| ||| ||||| ||||| |||||||| ||||| ||||| || |
Sbjct: 519 tcgttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagacta 578
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtct 214
| ||||||||||| || ||||| |||| ||||||||
Sbjct: 579 gaagtttccaatacgtctctgacttggtggagggtct 615
>gb|AL378617.1|AL378617 MtBB39D06F1 MtBB Medicago truncatula cDNA clone MtBB39D06 T3, mRNA
sequence
Length = 477
Score = 73.8 bits (37), Expect = 2e-011
Identities = 146/183 (79%)
Strand = Plus / Plus
Query: 137 gaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttc 196
||| ||||| ||||| |||||||| ||||| ||||| || || ||||||||||| || ||
Sbjct: 1 gaaggagcctttgacagtttatggggatgggaagcagactagaagtttccaatacgtctc 60
Query: 197 tgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacct 256
||| |||| |||||||| ||| || |||||||| || ||||| || || || |||||
Sbjct: 61 tgacttggtggagggtctaatgcgccttatggaaggggaacatgtggggccgttcaacct 120
Query: 257 gggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcga 316
|| || || || || || ||||||||||| |||||||| || ||||| || || |||||
Sbjct: 121 tggaaatcctggtgaatttaccatgctggaacttgccaaggtggtccaagaaacaatcga 180
Query: 317 ccc 319
|||
Sbjct: 181 ccc 183
>gb|CA920250.1|CA920250 EST637968 MTUS Medicago truncatula cDNA clone MTUS-25E8, mRNA
sequence
Length = 737
Score = 61.9 bits (31), Expect = 8e-008
Identities = 149/188 (79%), Gaps = 1/188 (0%)
Strand = Plus / Minus
Query: 132 ctgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatat 191
|||| ||| |||| ||||| |||||||| ||||| ||||| || || |||||||||||
Sbjct: 684 ctgaggaaggagcttttgacagtttatgg-gatgggaagcagactagaagtttccaatac 626
Query: 192 gtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccattt 251
|| ||||| |||| |||||||| ||| || |||||||| || ||||| || || ||
Sbjct: 625 gtctctgacttggtggagggtctaatgcgccttatggaaggggaacatgtggggccgttc 566
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
||||| || || || || || || ||||||||||| |||||||| || ||||| || ||
Sbjct: 565 aaccttggaaatcctggtgaatttaccatgctggaacttgccaaggtggtccaagaaaca 506
Query: 312 atcgaccc 319
||||||||
Sbjct: 505 atcgaccc 498
>gb|BG646200.1|BG646200 EST507819 KV3 Medicago truncatula cDNA clone pKV3-48D14 5' end,
mRNA sequence
Length = 661
Score = 58.0 bits (29), Expect = 1e-006
Identities = 122/151 (80%), Gaps = 4/151 (2%)
Strand = Plus / Minus
Query: 144 ccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctg 203
|||||||| || || |||||||| |||||||| | |||||||||||||| |||||| ||
Sbjct: 609 ccattgactgtatacggtgatgggaagcaaacacgaagtttccaatatgtctctgatttg 550
Query: 204 gtcgagggtctgatgaagc--tgatggaaggcgagcatgtaggaccatttaacctgggca 261
|| | || ||| | ||| ||||||| || || ||||| ||||| || || ||||| |
Sbjct: 549 gttaatgggctg--gcagctttgatggatggtgaacatgttggacctttcaatctgggta 492
Query: 262 accccggcgagttcaccatgctggagcttgc 292
|||| ||||||||||||||| | ||||||||
Sbjct: 491 acccaggcgagttcaccatgttagagcttgc 461
>gb|BG646201.1|BG646201 EST507820 KV3 Medicago truncatula cDNA clone pKV3-48D16 5' end,
mRNA sequence
Length = 576
Score = 58.0 bits (29), Expect = 1e-006
Identities = 122/151 (80%), Gaps = 4/151 (2%)
Strand = Plus / Minus
Query: 144 ccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctg 203
|||||||| || || |||||||| |||||||| | |||||||||||||| |||||| ||
Sbjct: 562 ccattgactgtatacggtgatgggaagcaaacacgaagtttccaatatgtctctgatttg 503
Query: 204 gtcgagggtctgatgaagc--tgatggaaggcgagcatgtaggaccatttaacctgggca 261
|| | || ||| | ||| ||||||| || || ||||| ||||| || || ||||| |
Sbjct: 502 gttaatgggctg--gcagctttgatggatggtgaacatgttggacctttcaatctgggta 445
Query: 262 accccggcgagttcaccatgctggagcttgc 292
|||| ||||||||||||||| | ||||||||
Sbjct: 444 acccaggcgagttcaccatgttagagcttgc 414
>gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete sequence
Length = 108802
Score = 56.0 bits (28), Expect = 5e-006
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 126 caggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttc 185
||||| |||| ||| ||||| ||||| |||||||| ||||| ||||| || || ||||||
Sbjct: 42369 caggcgctgaggaaggagcctttgacagtttatggggatgggaagcagactagaagtttc 42310
Query: 186 caatatgtttctga 199
||||| || |||||
Sbjct: 42309 caatacgtctctga 42296
>gb|BI312410.1|BI312410 EST5314160 GESD Medicago truncatula cDNA clone pGESD17P22 5' end,
mRNA sequence
Length = 625
Score = 52.0 bits (26), Expect = 7e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 223 tgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgc 282
||||||| || || ||||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct: 92 tgatggatggtgaacatgttggacctttcaatctgggtaacccaggcgagttcaccatgt 151
Query: 283 tggagcttgc 292
| ||||||||
Sbjct: 152 tagagcttgc 161
>gb|AC147012.23| Medicago truncatula clone mth2-151j16, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 119544
Score = 46.1 bits (23), Expect = 0.005
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 84 atgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
||||||||||| ||||| ||||| |||||| | ||||||||||||
Sbjct: 66839 atgtgcattgatgatgggcgtgtggtcagtaacttcgttgctcagg 66794
Score = 40.1 bits (20), Expect = 0.28
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 221 gctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccat 280
|||||||||||| || ||||| ||||| || || || ||||| || || || ||||||||
Sbjct: 65969 gctgatggaaggtgaacatgttggacctttcaatcttggcaatcctggtgaattcaccat 65910
Query: 281 gctggagcttgc 292
||| || |||||
Sbjct: 65909 gcttgaacttgc 65898
>gb|AC174367.2| Medicago truncatula clone mth2-47m8, WORKING DRAFT SEQUENCE
Length = 76602
Score = 46.1 bits (23), Expect = 0.005
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 84 atgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
||||||||||| ||||| ||||| |||||| | ||||||||||||
Sbjct: 9748 atgtgcattgatgatgggcgtgtggtcagtaacttcgttgctcagg 9793
Score = 40.1 bits (20), Expect = 0.28
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 221 gctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccat 280
|||||||||||| || ||||| ||||| || || || ||||| || || || ||||||||
Sbjct: 10618 gctgatggaaggtgaacatgttggacctttcaatcttggcaatcctggtgaattcaccat 10677
Query: 281 gctggagcttgc 292
||| || |||||
Sbjct: 10678 gcttgaacttgc 10689
>gb|AC181973.1| Medicago truncatula clone mth2-12f6, WORKING DRAFT SEQUENCE
Length = 115891
Score = 46.1 bits (23), Expect = 0.005
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 84 atgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
||||||||||| ||||| ||||| |||||| | ||||||||||||
Sbjct: 49053 atgtgcattgatgatgggcgtgtggtcagtaacttcgttgctcagg 49098
Score = 40.1 bits (20), Expect = 0.28
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 221 gctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccat 280
|||||||||||| || ||||| ||||| || || || ||||| || || || ||||||||
Sbjct: 49923 gctgatggaaggtgaacatgttggacctttcaatcttggcaatcctggtgaattcaccat 49982
Query: 281 gctggagcttgc 292
||| || |||||
Sbjct: 49983 gcttgaacttgc 49994
>gb|AL375748.1|AL375748 MtBB16G07R2 MtBB Medicago truncatula cDNA clone MtBB16G07 T7, mRNA
sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.071
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 276 accatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| |||||||| || ||||| || || ||||||||
Sbjct: 9 accatgctggaacttgccaaggtggtccaagatacaatcgaccc 52
>gb|AL388416.1|AL388416 MtBC48D08R1 MtBC Medicago truncatula cDNA clone MtBC48D08 T7, mRNA
sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.071
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 276 accatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| |||||||| || ||||| || || ||||||||
Sbjct: 18 accatgctggaacttgccaaggtggtccaagaaacaatcgaccc 61
>gb|BF519221.1|BF519221 EST456683 DSIL Medicago truncatula cDNA clone pDSIL-20E13, mRNA
sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.071
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 276 accatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| |||||||| || ||||| || || ||||||||
Sbjct: 1 accatgctggaacttgccaaggtggtccaagaaacaatcgaccc 44
>gb|BQ139639.1|BQ139639 NF022D07PH1F1061 Phoma-infected Medicago truncatula cDNA clone
NF022D07PH 5', mRNA sequence
Length = 711
Score = 42.1 bits (21), Expect = 0.071
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 276 accatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||| |||||||| || ||||| || || ||||||||
Sbjct: 603 accatgctggaacttgccaaggtggtccaagaaacaatcgaccc 560
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,176
Number of Sequences: 392609
Number of extensions: 114176
Number of successful extensions: 7566
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7535
Number of HSP's gapped (non-prelim): 30
length of query: 805
length of database: 441,732,993
effective HSP length: 20
effective length of query: 785
effective length of database: 433,880,813
effective search space: 340596438205
effective search space used: 340596438205
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)