BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE204926.1|BE204926 EST397546 KV0 Medicago truncatula cD... 58 9e-007
gb|AL385609.1|AL385609 MtBC29E08F1 MtBC Medicago truncatula... 58 9e-007
gb|AL388861.1|AL388861 MtBC51C02F1 MtBC Medicago truncatula... 58 9e-007
gb|BF003776.1|BF003776 EST432274 KV1 Medicago truncatula cD... 58 9e-007
gb|BG648445.1|BG648445 EST510064 HOGA Medicago truncatula c... 58 9e-007
gb|BI271708.1|BI271708 NF011C12FL1F1097 Developing flower M... 58 9e-007
gb|BI312109.1|BI312109 EST5313859 GESD Medicago truncatula ... 58 9e-007
gb|BM779610.1|BM779610 EST590186 KV2 Medicago truncatula cD... 58 9e-007
gb|BQ122598.1|BQ122598 EST608174 GLSD Medicago truncatula c... 58 9e-007
gb|AJ502254.1|AJ502254 AJ502254 MTAMP Medicago truncatula c... 58 9e-007
gb|CA921380.1|CA921380 EST639098 MTUS Medicago truncatula c... 58 9e-007
gb|CA989739.1|CA989739 EST643247 GLSD Medicago truncatula c... 58 9e-007
gb|CA991416.1|CA991416 EST644924 GESD Medicago truncatula c... 58 9e-007
gb|CB892321.1|CB892321 EST649290 KV3 Medicago truncatula cD... 58 9e-007
gb|CB892929.1|CB892929 EST645721 HOGA Medicago truncatula c... 58 9e-007
gb|CB895213.1|CB895213 EST648005 HOGA Medicago truncatula c... 58 9e-007
gb|CA920840.1|CA920840 EST638558 MTUS Medicago truncatula c... 58 9e-007
gb|CX517073.1|CX517073 s13dNF12C02VI018_398617 Virus-Infect... 58 9e-007
gb|CX518047.1|CX518047 s13dNF31D08VI074_421807 Virus-Infect... 58 9e-007
gb|CX518123.1|CX518123 s13dNF27D02VI014_421959 Virus-Infect... 58 9e-007
gb|CX520294.1|CX520294 s13dNF40A01VI001_444640 Virus-Infect... 58 9e-007
gb|CX521755.1|CX521755 s13dNF1SH04VI042_469314 Virus-Infect... 58 9e-007
gb|CX522959.1|CX522959 s13dNF87A06VI049_471722 Virus-Infect... 58 9e-007
gb|BG456918.1|BG456918 NF099B09PL1F1075 Phosphate starved l... 52 6e-005
gb|DW016606.1|DW016606 EST1225567 MTY Medicago truncatula c... 52 6e-005
gb|BF634288.1|BF634288 NF082G02DT1F1019 Drought Medicago tr... 50 2e-004
gb|CB894497.1|CB894497 EST647289 HOGA Medicago truncatula c... 50 2e-004
emb|CR335431.1| mte1-66I9FM1 BAC end, cultivar Jemalong A17... 44 0.014
gb|AW684102.1|AW684102 NF012D09NR1F1000 Nodulated root Medi... 40 0.22
>gb|BE204926.1|BE204926 EST397546 KV0 Medicago truncatula cDNA clone pKV0-18L21, mRNA
sequence
Length = 603
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 249 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 308
Query: 85 aattt 89
|||||
Sbjct: 309 aattt 313
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 345 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 404
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 405 tatgcacatttggctgcattcagggctaggttctacatgga 445
>gb|AL385609.1|AL385609 MtBC29E08F1 MtBC Medicago truncatula cDNA clone MtBC29E08 T3, mRNA
sequence
Length = 454
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 200 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 259
Query: 85 aattt 89
|||||
Sbjct: 260 aattt 264
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 296 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 355
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 356 tatgcacatttggctgcattcagggctaggttctacatgga 396
>gb|AL388861.1|AL388861 MtBC51C02F1 MtBC Medicago truncatula cDNA clone MtBC51C02 T3, mRNA
sequence
Length = 491
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 200 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 259
Query: 85 aattt 89
|||||
Sbjct: 260 aattt 264
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 296 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 355
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 356 tatgcacatttggctgcattcagggctaggttctacatgga 396
>gb|BF003776.1|BF003776 EST432274 KV1 Medicago truncatula cDNA clone pKV1-13L5, mRNA
sequence
Length = 601
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 329 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 388
Query: 85 aattt 89
|||||
Sbjct: 389 aattt 393
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 425 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 484
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 485 tatgcacatttggctgcattcagggctaggttctacatgga 525
>gb|BG648445.1|BG648445 EST510064 HOGA Medicago truncatula cDNA clone pHOGA-19F10 5' end,
mRNA sequence
Length = 832
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 591 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 650
Query: 85 aattt 89
|||||
Sbjct: 651 aattt 655
>gb|BI271708.1|BI271708 NF011C12FL1F1097 Developing flower Medicago truncatula cDNA clone
NF011C12FL 5', mRNA sequence
Length = 691
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 216 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 275
Query: 85 aattt 89
|||||
Sbjct: 276 aattt 280
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 312 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 371
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 372 tatgcacatttggctgcattcagggctaggttctacatgga 412
>gb|BI312109.1|BI312109 EST5313859 GESD Medicago truncatula cDNA clone pGESD17C13 5' end,
mRNA sequence
Length = 741
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 466 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 525
Query: 85 aattt 89
|||||
Sbjct: 526 aattt 530
>gb|BM779610.1|BM779610 EST590186 KV2 Medicago truncatula cDNA clone pKV2-52F5, mRNA
sequence
Length = 796
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 383 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 442
Query: 85 aattt 89
|||||
Sbjct: 443 aattt 447
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 479 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 538
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 539 tatgcacatttggctgcattcagggctaggttctacatgga 579
>gb|BQ122598.1|BQ122598 EST608174 GLSD Medicago truncatula cDNA clone pGLSD-29O2, mRNA
sequence
Length = 430
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 357 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 416
Query: 85 aattt 89
|||||
Sbjct: 417 aattt 421
>gb|AJ502254.1|AJ502254 AJ502254 MTAMP Medicago truncatula cDNA clone mtgmadc120018e05,
mRNA sequence
Length = 604
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 273 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 332
Query: 85 aattt 89
|||||
Sbjct: 333 aattt 337
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 369 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 428
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 429 tatgcacatttggctgcattcagggctaggttctacatgga 469
>gb|CA921380.1|CA921380 EST639098 MTUS Medicago truncatula cDNA clone MTUS-39F8, mRNA
sequence
Length = 736
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 706 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 647
Query: 85 aattt 89
|||||
Sbjct: 646 aattt 642
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 610 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 551
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 550 tatgcacatttggctgcattcagggctaggttctacatgga 510
>gb|CA989739.1|CA989739 EST643247 GLSD Medicago truncatula cDNA clone pGLSD-42J7, mRNA
sequence
Length = 647
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 210 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 269
Query: 85 aattt 89
|||||
Sbjct: 270 aattt 274
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 306 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 365
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 366 tatgcacatttggctgcattcagggctaggttctacatgga 406
>gb|CA991416.1|CA991416 EST644924 GESD Medicago truncatula cDNA clone GESD-32N10, mRNA
sequence
Length = 657
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 154 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 213
Query: 85 aattt 89
|||||
Sbjct: 214 aattt 218
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 250 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 309
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 310 tatgcacatttggctgcattcagggctaggttctacatgga 350
>gb|CB892321.1|CB892321 EST649290 KV3 Medicago truncatula cDNA clone KV3-53J20, mRNA
sequence
Length = 852
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 246 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 305
Query: 85 aattt 89
|||||
Sbjct: 306 aattt 310
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 342 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 401
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 402 tatgcacatttggctgcattcagggctaggttctacatgga 442
>gb|CB892929.1|CB892929 EST645721 HOGA Medicago truncatula cDNA clone HOGA-26O13, mRNA
sequence
Length = 776
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 514 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 573
Query: 85 aattt 89
|||||
Sbjct: 574 aattt 578
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 610 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 669
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 670 tatgcacatttggctgcattcagggctaggttctacatgga 710
>gb|CB895213.1|CB895213 EST648005 HOGA Medicago truncatula cDNA clone HOGA-33N16, mRNA
sequence
Length = 892
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 790 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 849
Query: 85 aattt 89
|||||
Sbjct: 850 aattt 854
>gb|CA920840.1|CA920840 EST638558 MTUS Medicago truncatula cDNA clone MTUS-32A1, mRNA
sequence
Length = 743
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 566 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 507
Query: 85 aattt 89
|||||
Sbjct: 506 aattt 502
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 470 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 411
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 410 tatgcacatttggctgcattcagggctaggttctacatgga 370
>gb|CX517073.1|CX517073 s13dNF12C02VI018_398617 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 543
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 187 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 246
Query: 85 aattt 89
|||||
Sbjct: 247 aattt 251
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 283 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 342
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 343 tatgcacatttggctgcattcagggctaggttctacatgga 383
>gb|CX518047.1|CX518047 s13dNF31D08VI074_421807 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 598
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 77 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 136
Query: 85 aattt 89
|||||
Sbjct: 137 aattt 141
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 173 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 232
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 233 tatgcacatttggctgcattcagggctaggttctacatgga 273
>gb|CX518123.1|CX518123 s13dNF27D02VI014_421959 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 579
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 77 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 136
Query: 85 aattt 89
|||||
Sbjct: 137 aattt 141
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 173 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 232
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 233 tatgcacatttggctgcattcagggctaggttctacatgga 273
>gb|CX520294.1|CX520294 s13dNF40A01VI001_444640 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 472
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 135 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 194
Query: 85 aattt 89
|||||
Sbjct: 195 aattt 199
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 231 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 290
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 291 tatgcacatttggctgcattcagggctaggttctacatgga 331
>gb|CX521755.1|CX521755 s13dNF1SH04VI042_469314 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 545
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 77 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 136
Query: 85 aattt 89
|||||
Sbjct: 137 aattt 141
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 173 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 232
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 233 tatgcacatttggctgcattcagggctaggttctacatgga 273
>gb|CX522959.1|CX522959 s13dNF87A06VI049_471722 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 471
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || |||||||||||
Sbjct: 77 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgagaat 136
Query: 85 aattt 89
|||||
Sbjct: 137 aattt 141
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 173 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 232
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 233 tatgcacatttggctgcattcagggctaggttctacatgga 273
>gb|BG456918.1|BG456918 NF099B09PL1F1075 Phosphate starved leaf Medicago truncatula cDNA
clone NF099B09PL 5', mRNA sequence
Length = 683
Score = 52.0 bits (26), Expect = 6e-005
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaac 84
||||||||||| ||||| ||||| | ||||||||||| ||||| || ||||||||||
Sbjct: 549 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgngggatgagaat 608
Query: 85 aattt 89
|||||
Sbjct: 609 aattt 613
>gb|DW016606.1|DW016606 EST1225567 MTY Medicago truncatula cDNA clone MTYAJ38, mRNA
sequence
Length = 735
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgaga 82
||||||||||| ||||| ||||| | ||||||||||| ||||| || ||||||||||
Sbjct: 677 catgctggaattcagggcacaagccgtcccgctcactatcatgtgctgtgggatgaga 734
>gb|BF634288.1|BF634288 NF082G02DT1F1019 Drought Medicago truncatula cDNA clone NF082G02DT
5', mRNA sequence
Length = 175
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 17 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 76
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 77 tatgcacatttggctgcattcagggctaggttctacatgga 117
>gb|CB894497.1|CB894497 EST647289 HOGA Medicago truncatula cDNA clone HOGA-31K16, mRNA
sequence
Length = 623
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| |||||| | ||||| || || |||||| |||| || || |||||
Sbjct: 77 aacctgtgctacacatatgccagatgcacccgttctgtttctattgtgcccccagcatat 136
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| |||| |||||| |||| |||||||||||||
Sbjct: 137 tatgcacatttggctgcattcagggctaggttctacatgga 177
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 52 cccgctcactaccatgtcctctgggatgagaacaattt 89
||||||||||| ||||| || ||||||||||| |||||
Sbjct: 8 cccgctcactatcatgtgctgtgggatgagaataattt 45
>emb|CR335431.1| mte1-66I9FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 806
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 52 cccgctcactaccatgtcctctgggatgagaacaattt 89
||||||||||| ||||| || ||||||||||| |||||
Sbjct: 260 cccgctcactatcatgtgctgtgggatgagaataattt 297
>gb|AW684102.1|AW684102 NF012D09NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF012D09NR 5', mRNA sequence
Length = 444
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 25 catgctggaatccagggaacaagtaggcccgctcactaccatgt 68
||||||||||| ||||| ||||| | ||||||||||| |||||
Sbjct: 397 catgctggaattcagggcacaagccgtcccgctcactatcatgt 440
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,176
Number of Sequences: 392609
Number of extensions: 138176
Number of successful extensions: 9984
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9920
Number of HSP's gapped (non-prelim): 64
length of query: 635
length of database: 441,732,993
effective HSP length: 19
effective length of query: 616
effective length of database: 434,273,422
effective search space: 267512427952
effective search space used: 267512427952
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)