BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL376427.1|AL376427 MtBB23G11F1 MtBB Medicago truncatula... 52 1e-004
gb|BF651104.1|BF651104 NF101B08EC1F1063 Elicited cell cultu... 52 1e-004
gb|CX538714.1|CX538714 s13dNF0IF08GS063_460680 Germinating ... 52 1e-004
gb|CX541590.1|CX541590 s13dNF87H11GS096_466482 Germinating ... 52 1e-004
gb|AQ629004.1|AQ629004 T120023b Medicago truncatula BAC lib... 46 0.006
gb|AQ629031.1|AQ629031 T120053g Medicago truncatula PCR pro... 46 0.006
gb|AW693952.2|AW693952 NF071B01ST1F1011 Developing stem Med... 46 0.006
gb|AW693030.2|AW693030 NF058G10ST1F1000 Developing stem Med... 46 0.006
gb|BQ135366.1|BQ135366 NF004C12EC1F1087 Elicited cell cultu... 46 0.006
gb|AW684460.1|AW684460 NF017B11NR1F1000 Nodulated root Medi... 42 0.098
gb|BI273241.1|BI273241 NF098G06FL1F1051 Developing flower M... 42 0.098
gb|AJ621868.1|AJ621868 AJ621868 Medicago truncatula J5 root... 42 0.098
gb|AC146575.3| Medicago truncatula clone mth2-145m4, comple... 40 0.39
emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2... 40 0.39
gb|AC166046.6| Medicago truncatula clone mth2-6p7, WORKING ... 40 0.39
gb|AC174278.7| Medicago truncatula clone mth2-9d14, WORKING... 40 0.39
>gb|AL376427.1|AL376427 MtBB23G11F1 MtBB Medicago truncatula cDNA clone MtBB23G11 T3, mRNA
sequence
Length = 383
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 233 gctttcaagactttgaagcataaaggtcaagcttgggt 270
|||||||||||| |||| ||||| ||||||||||||||
Sbjct: 110 gctttcaagactctgaaacataagggtcaagcttgggt 147
>gb|BF651104.1|BF651104 NF101B08EC1F1063 Elicited cell culture Medicago truncatula cDNA
clone NF101B08EC 5', mRNA sequence
Length = 650
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 233 gctttcaagactttgaagcataaaggtcaagcttgggt 270
|||||||||||| |||| ||||| ||||||||||||||
Sbjct: 591 gctttcaagactctgaaacataagggtcaagcttgggt 628
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaa 165
|||||||| ||||||||||||||||| || |||||
Sbjct: 489 accatctacatcaacaacctcaacgaaaaaatcaa 523
>gb|CX538714.1|CX538714 s13dNF0IF08GS063_460680 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 620
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 233 gctttcaagactttgaagcataaaggtcaagcttgggt 270
|||||||||||| |||| ||||| ||||||||||||||
Sbjct: 574 gctttcaagactctgaaacataagggtcaagcttgggt 611
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaa 165
|||||||| ||||||||||||||||| || |||||
Sbjct: 472 accatctacatcaacaacctcaacgaaaaaatcaa 506
>gb|CX541590.1|CX541590 s13dNF87H11GS096_466482 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 568
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 233 gctttcaagactttgaagcataaaggtcaagcttgggt 270
|||||||||||| |||| ||||| ||||||||||||||
Sbjct: 295 gctttcaagactctgaaacataagggtcaagcttgggt 332
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaa 165
|||||||| ||||||||||||||||| || |||||
Sbjct: 193 accatctacatcaacaacctcaacgaaaaaatcaa 227
>gb|AQ629004.1|AQ629004 T120023b Medicago truncatula BAC library Medicago truncatula
genomic clone 01N18, DNA sequence
Length = 449
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 131 accatctatatcaacaacctcaacgagaagatcaa 165
|||||||| ||||||||||||||||| || |||||
Sbjct: 216 accatctacatcaacaacctcaacgaaaaaatcaa 182
>gb|AQ629031.1|AQ629031 T120053g Medicago truncatula PCR product Medicago truncatula
genomic, DNA sequence
Length = 306
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 131 accatctatatcaacaacctcaacgagaagatcaa 165
|||||||| ||||||||||||||||| || |||||
Sbjct: 185 accatctacatcaacaacctcaacgaaaaaatcaa 151
>gb|AW693952.2|AW693952 NF071B01ST1F1011 Developing stem Medicago truncatula cDNA clone
NF071B01ST 5', mRNA sequence
Length = 619
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaa 165
|||||||| ||||||||||||||||| || |||||
Sbjct: 473 accatctacatcaacaacctcaacgaaaaaatcaa 507
>gb|AW693030.2|AW693030 NF058G10ST1F1000 Developing stem Medicago truncatula cDNA clone
NF058G10ST 5', mRNA sequence
Length = 617
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaa 165
|||||||| ||||||||||||||||| || |||||
Sbjct: 482 accatctacatcaacaacctcaacgaaaaaatcaa 516
>gb|BQ135366.1|BQ135366 NF004C12EC1F1087 Elicited cell culture Medicago truncatula cDNA
clone NF004C12EC 5', mRNA sequence
Length = 820
Score = 46.1 bits (23), Expect = 0.006
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 233 gctttcaagactttgaagcataaaggtc-aagcttgggt 270
|||||||||||| |||| |||||||||| ||||||||||
Sbjct: 624 gctttcaagactatgaaacataaaggtcaaagcttgggt 662
>gb|AW684460.1|AW684460 NF017B11NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF017B11NR 5', mRNA sequence
Length = 603
Score = 42.1 bits (21), Expect = 0.098
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 332 tatgacaaaactatgagaattcaatatgc 360
||||| ||| |||||||||||||||||||
Sbjct: 260 tatgaaaaacctatgagaattcaatatgc 288
>gb|BI273241.1|BI273241 NF098G06FL1F1051 Developing flower Medicago truncatula cDNA clone
NF098G06FL 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.098
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 332 tatgacaaaactatgagaattcaatatgc 360
||||| ||| |||||||||||||||||||
Sbjct: 269 tatgaaaaacctatgagaattcaatatgc 297
>gb|AJ621868.1|AJ621868 AJ621868 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs771, mRNA sequence
Length = 595
Score = 42.1 bits (21), Expect = 0.098
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 332 tatgacaaaactatgagaattcaatatgc 360
||||| ||| |||||||||||||||||||
Sbjct: 261 tatgaaaaacctatgagaattcaatatgc 289
>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence
Length = 117113
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 779 ttcaaaattacaaaagaaaa 798
||||||||||||||||||||
Sbjct: 114023 ttcaaaattacaaaagaaaa 114004
>emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE
Length = 133229
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 779 ttcaaaattacaaaagaaaa 798
||||||||||||||||||||
Sbjct: 9154 ttcaaaattacaaaagaaaa 9135
>gb|AC166046.6| Medicago truncatula clone mth2-6p7, WORKING DRAFT SEQUENCE, 8 unordered
pieces
Length = 118925
Score = 40.1 bits (20), Expect = 0.39
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 776 agcttcaaaattacaaaagaaaac 799
||||||||||||| ||||||||||
Sbjct: 13880 agcttcaaaattataaaagaaaac 13903
>gb|AC174278.7| Medicago truncatula clone mth2-9d14, WORKING DRAFT SEQUENCE, 24
unordered pieces
Length = 113275
Score = 40.1 bits (20), Expect = 0.39
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 775 aagcttcaaaattacaaaagaaaa 798
|||||| |||||||||||||||||
Sbjct: 2844 aagctttaaaattacaaaagaaaa 2867
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 289,061
Number of Sequences: 392609
Number of extensions: 289061
Number of successful extensions: 23925
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23877
Number of HSP's gapped (non-prelim): 48
length of query: 1096
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1076
effective length of database: 433,880,813
effective search space: 466855754788
effective search space used: 466855754788
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)