BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF633520.1|BF633520 NF056B08DT1F1073 Drought Medicago tr... 60 5e-007
gb|BF648296.1|BF648296 NF044C10EC1F1081 Elicited cell cultu... 60 5e-007
gb|AW687013.2|AW687013 NF005A06RT1F1040 Developing root Med... 60 5e-007
gb|BE325413.2|BE325413 NF088F11ST1F1091 Developing stem Med... 60 5e-007
gb|BI263433.1|BI263433 NF087C04PL1F1034 Phosphate starved l... 60 5e-007
gb|BQ137748.1|BQ137748 NF015C09NR1F1042 Nodulated root Medi... 60 5e-007
gb|AL375814.1|AL375814 MtBB19C05F1 MtBB Medicago truncatula... 56 7e-006
emb|CR339205.1| mte1-70O11RM1 BAC end, cultivar Jemalong A1... 42 0.11
gb|BG448658.1|BG448658 NF045F11NR1F1092 Nodulated root Medi... 40 0.42
gb|BG452222.1|BG452222 NF085B03LF1F1029 Developing leaf Med... 40 0.42
gb|CA923127.1|CA923127 EST640845 MTUS Medicago truncatula c... 40 0.42
>gb|BF633520.1|BF633520 NF056B08DT1F1073 Drought Medicago truncatula cDNA clone NF056B08DT
5', mRNA sequence
Length = 563
Score = 60.0 bits (30), Expect = 5e-007
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 286 aatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagcggatg 345
||||||||||| ||| |||||||||||| | |||||||||| || || || |||||
Sbjct: 244 aatgaggaatcaaaagctgttacaaaagcatctgccatgaaagctatcaaaaagaggatg 303
Query: 346 gagaaagatattgatgaagtggggaaaattgc 377
|| || |||||||||||||| ||||| |||||
Sbjct: 304 gaaaaggatattgatgaagttgggaagattgc 335
>gb|BF648296.1|BF648296 NF044C10EC1F1081 Elicited cell culture Medicago truncatula cDNA
clone NF044C10EC 5', mRNA sequence
Length = 665
Score = 60.0 bits (30), Expect = 5e-007
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 286 aatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagcggatg 345
||||||||||| ||| |||||||||||| | |||||||||| || || || |||||
Sbjct: 351 aatgaggaatcaaaagctgttacaaaagcatctgccatgaaagctatcaaaaagaggatg 410
Query: 346 gagaaagatattgatgaagtggggaaaattgc 377
|| || |||||||||||||| ||||| |||||
Sbjct: 411 gaaaaggatattgatgaagttgggaagattgc 442
>gb|AW687013.2|AW687013 NF005A06RT1F1040 Developing root Medicago truncatula cDNA clone
NF005A06RT 5', mRNA sequence
Length = 772
Score = 60.0 bits (30), Expect = 5e-007
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 286 aatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagcggatg 345
||||||||||| ||| |||||||||||| | |||||||||| || || || |||||
Sbjct: 128 aatgaggaatcaaaagctgttacaaaagcatctgccatgaaagctatcaaaaagaggatg 187
Query: 346 gagaaagatattgatgaagtggggaaaattgc 377
|| || |||||||||||||| ||||| |||||
Sbjct: 188 gaaaaggatattgatgaagttgggaagattgc 219
>gb|BE325413.2|BE325413 NF088F11ST1F1091 Developing stem Medicago truncatula cDNA clone
NF088F11ST 5', mRNA sequence
Length = 548
Score = 60.0 bits (30), Expect = 5e-007
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 286 aatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagcggatg 345
||||||||||| ||| |||||||||||| | |||||||||| || || || |||||
Sbjct: 330 aatgaggaatcaaaagctgttacaaaagcatctgccatgaaagctatcaaaaagaggatg 389
Query: 346 gagaaagatattgatgaagtggggaaaattgc 377
|| || |||||||||||||| ||||| |||||
Sbjct: 390 gaaaaggatattgatgaagttgggaagattgc 421
>gb|BI263433.1|BI263433 NF087C04PL1F1034 Phosphate starved leaf Medicago truncatula cDNA
clone NF087C04PL 5', mRNA sequence
Length = 603
Score = 60.0 bits (30), Expect = 5e-007
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 286 aatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagcggatg 345
||||||||||| ||| |||||||||||| | |||||||||| || || || |||||
Sbjct: 322 aatgaggaatcaaaagctgttacaaaagcatctgccatgaaagctatcaaaaagaggatg 381
Query: 346 gagaaagatattgatgaagtggggaaaattgc 377
|| || |||||||||||||| ||||| |||||
Sbjct: 382 gaaaaggatattgatgaagttgggaagattgc 413
>gb|BQ137748.1|BQ137748 NF015C09NR1F1042 Nodulated root Medicago truncatula cDNA clone
NF015C09NR 5', mRNA sequence
Length = 1550
Score = 60.0 bits (30), Expect = 5e-007
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 286 aatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagcggatg 345
||||||||||| ||| |||||||||||| | |||||||||| || || || |||||
Sbjct: 439 aatgaggaatcaaaagctgttacaaaagcatctgccatgaaagctatcaaaaagaggatg 498
Query: 346 gagaaagatattgatgaagtggggaaaattgc 377
|| || |||||||||||||| ||||| |||||
Sbjct: 499 gaaaaggatattgatgaagttgggaagattgc 530
>gb|AL375814.1|AL375814 MtBB19C05F1 MtBB Medicago truncatula cDNA clone MtBB19C05 T3, mRNA
sequence
Length = 409
Score = 56.0 bits (28), Expect = 7e-006
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 286 aatgaggaatccnaagnagttacaaaagcaagttccatgaaagcaattaagcagcggatg 345
||||||||||| ||| |||||||||||| | |||||||||| || || || |||||
Sbjct: 252 aatgaggaatcaaaagctgttacaaaagcatctgccatgaaagctatcaaaaagaggatg 311
Query: 346 gagaaagatattgatgaagtggggaa 371
|| || |||||||||||||| |||||
Sbjct: 312 gaaaaggatattgatgaagttgggaa 337
>emb|CR339205.1| mte1-70O11RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 498
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 341 ggatggagaaagatattgatgaagtggggaaaattgc 377
||||||| || |||||||||||||| ||||| |||||
Sbjct: 376 ggatggaaaaggatattgatgaagttgggaagattgc 340
>gb|BG448658.1|BG448658 NF045F11NR1F1092 Nodulated root Medicago truncatula cDNA clone
NF045F11NR 5', mRNA sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.42
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 497 tgaaaaagaaattgaaggaacggatggatgattttcagaccttgagagaagc 548
||||||||||| ||||||| ||||| ||| ||||||| | ||||||||||
Sbjct: 440 tgaaaaagaaactgaaggagaagatggctgaatttcagatcctgagagaagc 491
>gb|BG452222.1|BG452222 NF085B03LF1F1029 Developing leaf Medicago truncatula cDNA clone
NF085B03LF 5', mRNA sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.42
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 497 tgaaaaagaaattgaaggaacggatggatgattttcagaccttgagagaagc 548
||||||||||| ||||||| ||||| ||| ||||||| | ||||||||||
Sbjct: 459 tgaaaaagaaactgaaggagaagatggctgaatttcagatcctgagagaagc 510
>gb|CA923127.1|CA923127 EST640845 MTUS Medicago truncatula cDNA clone MTUS-63D3, mRNA
sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.42
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 497 tgaaaaagaaattgaaggaacggatggatgattttcagaccttgagagaagc 548
||||||||||| ||||||| ||||| ||| ||||||| | ||||||||||
Sbjct: 701 tgaaaaagaaactgaaggagaagatggctgaatttcagatcctgagagaagc 650
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 291,239
Number of Sequences: 392609
Number of extensions: 291239
Number of successful extensions: 21851
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21830
Number of HSP's gapped (non-prelim): 21
length of query: 1189
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1169
effective length of database: 433,880,813
effective search space: 507206670397
effective search space used: 507206670397
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)