BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF069019.1|CF069019 EST669740 MTUS Medicago truncatula c... 139 5e-031
gb|BG646172.1|BG646172 EST507791 KV3 Medicago truncatula cD... 123 3e-026
gb|AW690130.1|AW690130 NF028B12ST1F1000 Developing stem Med... 111 1e-022
gb|CX532799.1|CX532799 s13dNF71G04MJ024_271881 Methyl Jasmo... 111 1e-022
gb|AW696301.2|AW696301 NF103C02ST1F1008 Developing stem Med... 101 1e-019
gb|AC144478.20| Medicago truncatula clone mth2-20b20, compl... 101 1e-019
gb|AC127428.38| Medicago truncatula clone mth2-36c19, WORKI... 101 1e-019
gb|BI263873.1|BI263873 NF093D04PL1F1042 Phosphate starved l... 96 7e-018
gb|BI308510.1|BI308510 EST529920 GPOD Medicago truncatula c... 96 7e-018
gb|BE325221.2|BE325221 NF114H07ST1F1063 Developing stem Med... 76 7e-012
gb|BG448768.1|BG448768 NF044C12NR1F1087 Nodulated root Medi... 76 7e-012
gb|BG451672.1|BG451672 NF092H12DT1F1101 Drought Medicago tr... 72 1e-010
gb|AC151529.20| Medicago truncatula clone mth2-7n23, comple... 70 4e-010
gb|AW690249.2|AW690249 NF031B04ST1F1000 Developing stem Med... 64 2e-008
gb|AQ579825.1|AQ579825 T135322b shotgun sub-library of BAC ... 60 4e-007
gb|CG965385.1|CG965385 MBECF81TF mth2 Medicago truncatula g... 60 4e-007
gb|AW688927.1|AW688927 NF013C11ST1F1000 Developing stem Med... 60 4e-007
gb|AC123575.10| Medicago truncatula clone mth1-31p6, comple... 60 4e-007
emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1... 60 4e-007
gb|AC144483.10| Medicago truncatula clone mth2-12f13, compl... 50 4e-004
gb|AW693184.2|AW693184 NF063A03ST1F1000 Developing stem Med... 42 0.091
gb|AC140023.13| Medicago truncatula clone mth2-32h4, comple... 42 0.091
gb|CB894037.1|CB894037 EST646829 HOGA Medicago truncatula c... 40 0.36
>gb|CF069019.1|CF069019 EST669740 MTUS Medicago truncatula cDNA clone MTUS-15C12, mRNA
sequence
Length = 547
Score = 139 bits (70), Expect = 5e-031
Identities = 214/262 (81%)
Strand = Plus / Plus
Query: 130 ggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcc 189
||||||| ||||| ||||| || || |||||||| ||||| ||||||||||| ||||| |
Sbjct: 123 ggccacaaactgttatgccatcatcagttctttcaagtgatagcatgcacattggacttc 182
Query: 190 ttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatccta 249
||||||| ||||| |||||||| ||||| || ||| |||| ||| | |||| |||||| |
Sbjct: 183 ttgcagctgcagcacatgctgcagcaactaatagctgctttacagtgttctttaatccaa 242
Query: 250 gggcaagtccaacagaatttgttatacccctttcgaaatacatcaaggctgtttttcaca 309
|||| |||||| | || || || ||||| || || ||||| ||||| ||||| | || |
Sbjct: 243 gggctagtccatccgagttcgtcataccactctcaaaatatatcaaagctgtgtaccata 302
Query: 310 cgcggatatcagttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtcc 369
| || | || || || ||||| ||||||||| | ||||||||||| |||||||||||||
Sbjct: 303 cacgcgtttctgtcggtatgcgtttcaggatgctttttgagactgaagaatcaagtgtcc 362
Query: 370 gcaggtacatggggacaataac 391
||||||||||||| || |||||
Sbjct: 363 gcaggtacatgggtactataac 384
Score = 65.9 bits (33), Expect = 6e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 24 ggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcata 83
|||||||| || ||||| ||||| || ||||| || ||||||||||||||||| |||||
Sbjct: 17 ggctggagcgtatttgttagtgcaaaaagactagtagctggagattctgtgcttttcatt 76
Query: 84 tggaatgagaaaaaccagctt 104
|||||||| || || ||||||
Sbjct: 77 tggaatgaaaagaatcagctt 97
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaac 469
||||||| || || |||||||||||||||||||||||
Sbjct: 426 attggaggtctgttaaggttggttgggatgaatcaac 462
>gb|BG646172.1|BG646172 EST507791 KV3 Medicago truncatula cDNA clone pKV3-48N21 5' end,
mRNA sequence
Length = 802
Score = 123 bits (62), Expect = 3e-026
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 441 tcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctg 500
|||||||||||||| |||||||| || || ||||| || |||| ||||||||| ||||||
Sbjct: 94 tcagtgaaggttggctgggatgagtccacagcaggtgagaggcaacctagagtatctctg 153
Query: 501 tgggaaattgagccactgacaacctttcctatgtatccatccctgttccc 550
||||||||||||||||| ||||||||||| ||||||||||| | ||||||
Sbjct: 154 tgggaaattgagccactaacaacctttccaatgtatccatctccgttccc 203
>gb|AW690130.1|AW690130 NF028B12ST1F1000 Developing stem Medicago truncatula cDNA clone
NF028B12ST 5', mRNA sequence
Length = 680
Score = 111 bits (56), Expect = 1e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 225 actggatggagtgtttttgtgagtgctaaaagacttgttgctggtgattctgtgctgttt 284
Query: 81 atatggaatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagact 140
|| |||||||| || ||||| | | ||||| || | | |||| ||| ||||| |||
Sbjct: 285 atctggaatgaaaagaaccaattgcttcttggtattcgccgtgctagccgaccacaaact 344
Query: 141 gtgatgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagca 200
|||||||| || || || | || ||||| || |||||| | ||||| ||||| ||||||
Sbjct: 345 gtgatgccttcctcagtattgtcaagtgatagtatgcacttgggacttcttgctgcagca 404
Query: 201 gctcatgctgctgcaacaaacagccgcttcacaattttctataa 244
|||||||| |||||||| || ||||| ||||| |||||||||||
Sbjct: 405 gctcatgcggctgcaaccaatagccgtttcactattttctataa 448
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 447 aaggttggttgggatgaatc 466
||||||||||||||||||||
Sbjct: 651 aaggttggttgggatgaatc 670
>gb|CX532799.1|CX532799 s13dNF71G04MJ024_271881 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 655
Score = 111 bits (56), Expect = 1e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 141 actggatggagtgtttttgtgagtgctaaaagacttgttgctggtgattctgtgctgttt 200
Query: 81 atatggaatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagact 140
|| |||||||| || ||||| | | ||||| || | | |||| ||| ||||| |||
Sbjct: 201 atctggaatgaaaagaaccaattgcttcttggtattcgccgtgctagccgaccacaaact 260
Query: 141 gtgatgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagca 200
|||||||| || || || | || ||||| || |||||| | ||||| ||||| ||||||
Sbjct: 261 gtgatgccttcctcagtattgtcaagtgatagtatgcacttgggacttcttgctgcagca 320
Query: 201 gctcatgctgctgcaacaaacagccgcttcacaattttctataa 244
|||||||| |||||||| || ||||| ||||| |||||||||||
Sbjct: 321 gctcatgcggctgcaaccaatagccgtttcactattttctataa 364
Score = 91.7 bits (46), Expect = 1e-016
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 447 aaggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaa 506
|||||||||||||||||||| || || |||||||||| ||||| ||| ||| ||||||||
Sbjct: 567 aaggttggttgggatgaatccactgccggagaaaggcaacctanagtgtctttgtgggaa 626
Query: 507 attgagccactgacaacctttcctatgta 535
|| |||||| | ||||| |||||||||||
Sbjct: 627 atcgagccattaacaacgtttcctatgta 655
>gb|AW696301.2|AW696301 NF103C02ST1F1008 Developing stem Medicago truncatula cDNA clone
NF103C02ST 5', mRNA sequence
Length = 528
Score = 101 bits (51), Expect = 1e-019
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 456 tgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaattgagcca 515
|||||||| || || ||||| || |||| ||||||||| |||||||||||||||||||||
Sbjct: 2 tgggatgagtccacagcaggtgagaggcaacctagagtatctctgtgggaaattgagcca 61
Query: 516 ctgacaacctttcctatgtatccatccctgttccc 550
|| ||||||||||| ||||||||||| | ||||||
Sbjct: 62 ctaacaacctttccaatgtatccatctccgttccc 96
>gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete sequence
Length = 144248
Score = 101 bits (51), Expect = 1e-019
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||||||||||||||| || || |||||||||| ||||||||| ||| |||||||||
Sbjct: 58799 aggttggttgggatgaatccactgccggagaaaggcaacctagagtgtctttgtgggaaa 58858
Query: 508 ttgagccactgacaacctttcctatgtatcc 538
| |||||| | ||||| ||||||||||||||
Sbjct: 58859 tcgagccattaacaacgtttcctatgtatcc 58889
Score = 75.8 bits (38), Expect = 7e-012
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 123 gctacccggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatc 182
|||| ||| ||||| ||||||||||| || || || | || ||||| || |||||| |
Sbjct: 58059 gctagccgaccacaaactgtgatgccttcctcagtattgtcaagtgatagtatgcacttg 58118
Query: 183 ggactccttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctat 242
||||| ||||| |||||||||||||| |||||||| || ||||| ||||| |||||||||
Sbjct: 58119 ggacttcttgctgcagcagctcatgcggctgcaaccaatagccgtttcactattttctat 58178
Query: 243 aa 244
||
Sbjct: 58179 aa 58180
Score = 71.9 bits (36), Expect = 1e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgct 76
||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 57677 actggatggagtgtttttgtgagtgctaaaagacttgttgctggtgattctgtgct 57732
>gb|AC127428.38| Medicago truncatula clone mth2-36c19, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 274828
Score = 101 bits (51), Expect = 1e-019
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||||||||||||||| || || |||||||||| ||||||||| ||| |||||||||
Sbjct: 223240 aggttggttgggatgaatccactgccggagaaaggcaacctagagtgtctttgtgggaaa 223181
Query: 508 ttgagccactgacaacctttcctatgtatcc 538
| |||||| | ||||| ||||||||||||||
Sbjct: 223180 tcgagccattaacaacgtttcctatgtatcc 223150
Score = 75.8 bits (38), Expect = 7e-012
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 123 gctacccggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatc 182
|||| ||| ||||| ||||||||||| || || || | || ||||| || |||||| |
Sbjct: 223980 gctagccgaccacaaactgtgatgccttcctcagtattgtcaagtgatagtatgcacttg 223921
Query: 183 ggactccttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctat 242
||||| ||||| |||||||||||||| |||||||| || ||||| ||||| |||||||||
Sbjct: 223920 ggacttcttgctgcagcagctcatgcggctgcaaccaatagccgtttcactattttctat 223861
Query: 243 aa 244
||
Sbjct: 223860 aa 223859
Score = 71.9 bits (36), Expect = 1e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgct 76
||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 224362 actggatggagtgtttttgtgagtgctaaaagacttgttgctggtgattctgtgct 224307
>gb|BI263873.1|BI263873 NF093D04PL1F1042 Phosphate starved leaf Medicago truncatula cDNA
clone NF093D04PL 5', mRNA sequence
Length = 401
Score = 95.6 bits (48), Expect = 7e-018
Identities = 141/172 (81%)
Strand = Plus / Plus
Query: 130 ggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcc 189
||||||| ||||| ||||| || || |||||||| ||||| ||||||||||| ||||| |
Sbjct: 179 ggccacaaactgttatgccatcatcagttctttcaagtgatagcatgcacattggacttc 238
Query: 190 ttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatccta 249
||||||| ||||| |||||||| ||||| || ||| |||| ||| | |||| |||||| |
Sbjct: 239 ttgcagctgcagcacatgctgcagcaactaatagctgctttacagtgttctttaatccaa 298
Query: 250 gggcaagtccaacagaatttgttatacccctttcgaaatacatcaaggctgt 301
|||| |||||| | || || || ||||| || || ||||| ||||| |||||
Sbjct: 299 gggctagtccatccgagttcgtcataccactctcaaaatatatcaaagctgt 350
Score = 65.9 bits (33), Expect = 6e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 24 ggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcata 83
|||||||| || ||||| ||||| || ||||| || ||||||||||||||||| |||||
Sbjct: 73 ggctggagcgtatttgttagtgcaaaaagactagtagctggagattctgtgcttttcatt 132
Query: 84 tggaatgagaaaaaccagctt 104
|||||||| || || ||||||
Sbjct: 133 tggaatgaaaagaatcagctt 153
>gb|BI308510.1|BI308510 EST529920 GPOD Medicago truncatula cDNA clone pGPOD-7G21 5' end,
mRNA sequence
Length = 521
Score = 95.6 bits (48), Expect = 7e-018
Identities = 141/172 (81%)
Strand = Plus / Plus
Query: 130 ggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcc 189
||||||| ||||| ||||| || || |||||||| ||||| ||||||||||| ||||| |
Sbjct: 132 ggccacaaactgttatgccatcatcagttctttcaagtgatagcatgcacattggacttc 191
Query: 190 ttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataatccta 249
||||||| ||||| |||||||| ||||| || ||| |||| ||| | |||| |||||| |
Sbjct: 192 ttgcagctgcagcacatgctgcagcaactaatagctgctttacagtgttctttaatccaa 251
Query: 250 gggcaagtccaacagaatttgttatacccctttcgaaatacatcaaggctgt 301
|||| |||||| | || || || ||||| || || ||||| ||||| |||||
Sbjct: 252 gggctagtccatccgagttcgtcataccactctcaaaatatatcaaagctgt 303
Score = 77.8 bits (39), Expect = 2e-012
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 333 ttcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatggggacaataac 391
||||||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 338 ttcaggatgctttttgagactgaagaatcaagtgtccgcaggtacatgggtactataac 396
Score = 67.9 bits (34), Expect = 2e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 19 acactggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctat 78
|||| |||||||| || ||||| ||||| || ||||| || ||||||||||||||||| |
Sbjct: 21 acacaggctggagcgtatttgttagtgcaaaaagactagtagctggagattctgtgcttt 80
Query: 79 tcatatggaatgagaaaaaccagctt 104
|||| |||||||| || || ||||||
Sbjct: 81 tcatttggaatgaaaagaatcagctt 106
>gb|BE325221.2|BE325221 NF114H07ST1F1063 Developing stem Medicago truncatula cDNA clone
NF114H07ST 5', mRNA sequence
Length = 392
Score = 75.8 bits (38), Expect = 7e-012
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 123 gctacccggccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatc 182
|||| ||| ||||| ||||||||||| || || || | || ||||| || |||||| |
Sbjct: 41 gctagccgaccacaaactgtgatgccttcctcagtattgtcaagtgatagtatgcacttg 100
Query: 183 ggactccttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctat 242
||||| ||||| |||||||||||||| |||||||| || ||||| ||||| |||||||||
Sbjct: 101 ggacttcttgctgcagcagctcatgcggctgcaaccaatagccgtttcactattttctat 160
Query: 243 aa 244
||
Sbjct: 161 aa 162
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 447 aaggttggttgggatgaatc 466
||||||||||||||||||||
Sbjct: 365 aaggttggttgggatgaatc 384
>gb|BG448768.1|BG448768 NF044C12NR1F1087 Nodulated root Medicago truncatula cDNA clone
NF044C12NR 5', mRNA sequence
Length = 671
Score = 75.8 bits (38), Expect = 7e-012
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
|||||||| ||||| |||||||| |||||||||||||| ||||| ||||| || ||||||
Sbjct: 593 tggagtgtctttgtgagtgctaaaagacttgttgctggtgattcagtgctgtttatatgg 652
Query: 87 aatgagaaaa 96
||||| ||||
Sbjct: 653 aatgaaaaaa 662
>gb|BG451672.1|BG451672 NF092H12DT1F1101 Drought Medicago truncatula cDNA clone NF092H12DT
5', mRNA sequence
Length = 677
Score = 71.9 bits (36), Expect = 1e-010
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgct 76
||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 495 actggatggagtgtttttgtgagtgctaaaagacttgttgctggtgattctgtgct 550
>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence
Length = 134908
Score = 69.9 bits (35), Expect = 4e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 36 tttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
||||| ||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 49255 tttgttagtgctaagagacttgtagctggagattccgtgcttttcatatgg 49205
Score = 65.9 bits (33), Expect = 6e-009
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 321 gttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtac 377
||||| ||||| ||||||||| | ||||||||||| || ||||||||||||||||||
Sbjct: 48790 gttggtatgcgcttcaggatgctctttgagactgaagagtcaagtgtccgcaggtac 48734
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaaccgcaggaga 478
||||||| |||||||||||||| ||||||||
Sbjct: 47585 aggttggatgggatgaatcaacagcaggaga 47555
>gb|AW690249.2|AW690249 NF031B04ST1F1000 Developing stem Medicago truncatula cDNA clone
NF031B04ST 5', mRNA sequence
Length = 673
Score = 63.9 bits (32), Expect = 2e-008
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
|||||||| |||| |||||||| ||||||| |||||| ||||| ||||| || ||||||
Sbjct: 589 tggagtgtctttgngagtgctaaaagacttgntgctggtgattcagtgctgtttatatgg 648
Query: 87 aatgagaaaa 96
||||| ||||
Sbjct: 649 aatgaaaaaa 658
>gb|AQ579825.1|AQ579825 T135322b shotgun sub-library of BAC clone 31P06 Medicago truncatula
genomic clone 31-P-06-C-034, DNA sequence
Length = 552
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtg 74
||||| |||||||| ||||| |||||||| | |||||||||||| |||||||||
Sbjct: 486 actggatggagtgtttttgtgagtgctaaaatacttgttgctggcgattctgtg 539
>gb|CG965385.1|CG965385 MBECF81TF mth2 Medicago truncatula genomic clone 25M18, DNA
sequence
Length = 925
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 183 ggactccttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctat 242
||||| ||||| |||||||||||||| |||||||| || |||| ||||| |||||||||
Sbjct: 657 ggacttcttgctgcagcagctcatgcggctgcaaccaatagccctttcactattttctat 598
Query: 243 aa 244
||
Sbjct: 597 aa 596
>gb|AW688927.1|AW688927 NF013C11ST1F1000 Developing stem Medicago truncatula cDNA clone
NF013C11ST 5', mRNA sequence
Length = 398
Score = 60.0 bits (30), Expect = 4e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgctgctgcaacaaacagc 224
||||| || |||||||| ||| |||| || ||||||||||||||| ||||| || ||
Sbjct: 133 agtgatagtatgcacattggaatcctggctgcagcagctcatgctagtgcaaacaatagt 192
Query: 225 cgcttcacaattttctataatcctagggcaagtccaacagaatttgttat 274
| |||||| | || |||||||||||||| ||||| |||||||||||||
Sbjct: 193 cccttcaccgtgttttataatcctagggccagtccctcagaatttgttat 242
>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence
Length = 83007
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtg 74
||||| |||||||| ||||| |||||||| | |||||||||||| |||||||||
Sbjct: 60971 actggatggagtgtttttgtgagtgctaaaatacttgttgctggcgattctgtg 60918
Score = 52.0 bits (26), Expect = 9e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 183 ggactccttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctat 242
||||| ||||| |||| ||||||||| |||||||| || |||| ||||| |||||||||
Sbjct: 60572 ggacttcttgctgcagtagctcatgcggctgcaaccaatagccctttcactattttctat 60513
Query: 243 aa 244
||
Sbjct: 60512 aa 60511
>emb|CR932959.2| Medicago truncatula chromosome 5 clone mte1-55f11, COMPLETE SEQUENCE
Length = 102868
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtg 74
||||| |||||||| ||||| |||||||| | |||||||||||| |||||||||
Sbjct: 78011 actggatggagtgtttttgtgagtgctaaaatacttgttgctggcgattctgtg 78064
Score = 52.0 bits (26), Expect = 9e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 183 ggactccttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctat 242
||||| ||||| |||| ||||||||| |||||||| || |||| ||||| |||||||||
Sbjct: 78410 ggacttcttgctgcagtagctcatgcggctgcaaccaatagccctttcactattttctat 78469
Query: 243 aa 244
||
Sbjct: 78470 aa 78471
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence
Length = 105599
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgt 73
||||| |||||||| ||| |||| | ||||||||| ||||||||||||||||
Sbjct: 51469 actggttggagtgtatttatcagcacaaagagactttttgctggagattctgt 51417
>gb|AW693184.2|AW693184 NF063A03ST1F1000 Developing stem Medicago truncatula cDNA clone
NF063A03ST 5', mRNA sequence
Length = 191
Score = 42.1 bits (21), Expect = 0.091
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| || |||||||| ||| |||| || |||||||||||||||
Sbjct: 105 agtgatagtatgcacattggaatcctggctgcagcagctcatgct 149
>gb|AC140023.13| Medicago truncatula clone mth2-32h4, complete sequence
Length = 152468
Score = 42.1 bits (21), Expect = 0.091
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| || |||||||| ||| |||| || |||||||||||||||
Sbjct: 129324 agtgatagtatgcacattggaatcctggctgcagcagctcatgct 129368
Score = 40.1 bits (20), Expect = 0.36
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggc 483
||||||||||||||||| | ||||| || |||||||
Sbjct: 130171 aggttggttgggatgaagccaccgctggggaaaggc 130206
>gb|CB894037.1|CB894037 EST646829 HOGA Medicago truncatula cDNA clone HOGA-29H14, mRNA
sequence
Length = 833
Score = 40.1 bits (20), Expect = 0.36
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgctgct 212
|||||||||||||| ||||| | ||||| || || ||||||||||||
Sbjct: 540 agtgacagcatgcatatcgggattcttgctgctgcggctcatgctgct 587
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 255,325
Number of Sequences: 392609
Number of extensions: 255325
Number of successful extensions: 30484
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30398
Number of HSP's gapped (non-prelim): 80
length of query: 1029
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1009
effective length of database: 433,880,813
effective search space: 437785740317
effective search space used: 437785740317
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)