BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950292.2.1
(1205 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW268022.1|AW268022 EST306244 DSIR Medicago truncatula c... 147 3e-033
gb|AW685855.1|AW685855 NF035H05NR1F1000 Nodulated root Medi... 147 3e-033
gb|AJ501226.1|AJ501226 AJ501226 MTAMP Medicago truncatula c... 147 3e-033
gb|DW016295.1|DW016295 EST1225256 MTY Medicago truncatula c... 147 3e-033
gb|BE247992.2|BE247992 NF021F01DT1F1012 Drought Medicago tr... 113 4e-023
gb|BE320843.2|BE320843 NF029B02RT1F1013 Developing root Med... 58 2e-006
gb|AW171637.2|AW171637 N100531e rootphos(-) Medicago trunca... 44 0.027
>gb|AW268022.1|AW268022 EST306244 DSIR Medicago truncatula cDNA clone pDSIR-8B12, mRNA
sequence
Length = 675
Score = 147 bits (74), Expect = 3e-033
Identities = 125/142 (88%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 240 tcaagtggcaacaaatggatgttgaatacactttttggcaaatgcttcatctatgtacgt 299
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| |||||||| ||||||||||| || ||||||||||| ||||| ||||| || ||||| |
Sbjct: 300 cgccaaaagttgtctatcagcatacaaaatatcacaaacaaaccaagaatcaatgggcac 359
Query: 297 gtgatgatcctgcatttgttgt 318
| ||||| ||||||||||||||
Sbjct: 360 gcgatgaccctgcatttgttgt 381
>gb|AW685855.1|AW685855 NF035H05NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF035H05NR 5', mRNA sequence
Length = 649
Score = 147 bits (74), Expect = 3e-033
Identities = 125/142 (88%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 228 tcaagtggcaacaaatggatgttgaatacactttttggcaaatgcttcatctatgtacgt 287
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| |||||||| ||||||||||| || ||||||||||| ||||| ||||| || ||||| |
Sbjct: 288 cgccaaaagttgtctatcagcatacaaaatatcacaaacaaaccaagaatcaatgggcac 347
Query: 297 gtgatgatcctgcatttgttgt 318
| ||||| ||||||||||||||
Sbjct: 348 gcgatgaccctgcatttgttgt 369
>gb|AJ501226.1|AJ501226 AJ501226 MTAMP Medicago truncatula cDNA clone mtgmadc120004c08,
mRNA sequence
Length = 709
Score = 147 bits (74), Expect = 3e-033
Identities = 125/142 (88%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 270 tcaagtggcaacaaatggatgttgaatacactttttggcaaatgcttcatctatgtacgt 329
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| |||||||| ||||||||||| || ||||||||||| ||||| ||||| || ||||| |
Sbjct: 330 cgccaaaagttgtctatcagcatacaaaatatcacaaacaaaccaagaatcaatgggcac 389
Query: 297 gtgatgatcctgcatttgttgt 318
| ||||| ||||||||||||||
Sbjct: 390 gcgatgaccctgcatttgttgt 411
>gb|DW016295.1|DW016295 EST1225256 MTY Medicago truncatula cDNA clone MTYAF46, mRNA
sequence
Length = 533
Score = 147 bits (74), Expect = 3e-033
Identities = 125/142 (88%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 265 tcaagtggcaacaaatggatgttgaatacactttttggcaaatgcttcatctatgtacgt 324
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggccc 296
| |||||||| ||||||||||| || ||||||||||| ||||| ||||| || ||||| |
Sbjct: 325 cgccaaaagttgtctatcagcatacaaaatatcacaaacaaaccaagaatcaatgggcac 384
Query: 297 gtgatgatcctgcatttgttgt 318
| ||||| ||||||||||||||
Sbjct: 385 gcgatgaccctgcatttgttgt 406
>gb|BE247992.2|BE247992 NF021F01DT1F1012 Drought Medicago truncatula cDNA clone NF021F01DT
5', mRNA sequence
Length = 536
Score = 113 bits (57), Expect = 4e-023
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 177 tcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgtactt 236
||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||||| |
Sbjct: 199 tcaagtggcaacaaatggatgttgaatacactttttggcaaatgcttcatctatgtacgt 258
Query: 237 caccaaaagtagtctatcagcacaccaaatatcacaa 273
| |||||||| ||||||||||| || |||||||||||
Sbjct: 259 cgccaaaagttgtctatcagcatacaaaatatcacaa 295
>gb|BE320843.2|BE320843 NF029B02RT1F1013 Developing root Medicago truncatula cDNA clone
NF029B02RT 5', mRNA sequence
Length = 68
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 239 ccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgggcccgt 298
|||||||| ||||||||||| || ||||||||||| ||||| ||||| || ||||| ||
Sbjct: 2 ccaaaagttgtctatcagcatacaaaatatcacaaacaaaccaagaatcaatgggcacgc 61
Query: 299 gatga 303
|||||
Sbjct: 62 gatga 66
>gb|AW171637.2|AW171637 N100531e rootphos(-) Medicago truncatula cDNA clone MHRP-8A11, mRNA
sequence
Length = 606
Score = 44.1 bits (22), Expect = 0.027
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 581 ctatatgtggtgcagtattttctgtcgcctctattggtcgcgcatggcttctttccag 638
||||||||| | || |||||||| || ||||||||||| || ||||| ||| ||||||
Sbjct: 136 ctatatgtgatccattattttctatctcctctattggtggctcatggtttcattccag 193
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 308,897
Number of Sequences: 392609
Number of extensions: 308897
Number of successful extensions: 21865
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21857
Number of HSP's gapped (non-prelim): 8
length of query: 1205
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1185
effective length of database: 433,880,813
effective search space: 514148763405
effective search space used: 514148763405
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)