BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC141922.19| Medicago truncatula clone mth2-9n11, comple... 62 3e-007
gb|AC142094.12| Medicago truncatula clone mth2-34h6, comple... 62 3e-007
gb|AC170800.5| Medicago truncatula clone mth2-32n7, complet... 62 3e-007
gb|AC144931.28| Medicago truncatula clone mth2-22b18, compl... 62 3e-007
gb|BI308772.1|BI308772 EST530182 GPOD Medicago truncatula c... 54 8e-005
gb|CX527617.1|CX527617 s13dNF45E07AT055_515746 Aphid-Infect... 50 0.001
gb|BF641696.1|BF641696 NF058F07IN1F1062 Insect herbivory Me... 48 0.005
gb|AA660817.1|AA660817 00711 MtRHE Medicago truncatula cDNA... 42 0.30
gb|AW299129.1|AW299129 EST305803 KV2 Medicago truncatula cD... 42 0.30
gb|AL368436.1|AL368436 MtBA24D12R1 MtBA Medicago truncatula... 42 0.30
gb|BQ255328.1|BQ255328 MTNAB06TKN KVKC Medicago truncatula ... 42 0.30
gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone m... 42 0.30
gb|AC122167.8| Medicago truncatula clone mth1-10d10, comple... 42 0.30
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
Length = 107448
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1357 ccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtaccaccataa 1416
|||||||| |||||| |||| ||||| ||||| || ||||| ||||| ||||||||||||
Sbjct: 52544 ccacccattagttcaactaggcacttactgatactcaaaccaatgccggtaccaccataa 52485
Query: 1417 ttccttgaagt 1427
|| || |||||
Sbjct: 52484 tttctagaagt 52474
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2530 aaattctccacaagtgactccacatcaaagg 2560
||||| |||||||||||||||||||||||||
Sbjct: 50792 aaattttccacaagtgactccacatcaaagg 50762
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
Length = 151594
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1357 ccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtaccaccataa 1416
|||||||| |||||| |||| ||||| ||||| || ||||| ||||| ||||||||||||
Sbjct: 127516 ccacccattagttcaactaggcacttactgatactcaaaccaatgccggtaccaccataa 127575
Query: 1417 ttccttgaagt 1427
|| || |||||
Sbjct: 127576 tttctagaagt 127586
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2530 aaattctccacaagtgactccacatcaaagg 2560
||||| |||||||||||||||||||||||||
Sbjct: 129268 aaattttccacaagtgactccacatcaaagg 129298
>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
Length = 99712
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1357 ccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtaccaccataa 1416
|||||||| |||||| |||| ||||| ||||| || ||||| ||||| ||||||||||||
Sbjct: 42062 ccacccattagttcaactaggcacttactgatactcaaaccaatgccggtaccaccataa 42003
Query: 1417 ttccttgaagt 1427
|| || |||||
Sbjct: 42002 tttctagaagt 41992
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2530 aaattctccacaagtgactccacatcaaagg 2560
||||| |||||||||||||||||||||||||
Sbjct: 40310 aaattttccacaagtgactccacatcaaagg 40280
>gb|AC144931.28| Medicago truncatula clone mth2-22b18, complete sequence
Length = 122821
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1357 ccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtaccaccataa 1416
|||||||| |||||| |||| ||||| ||||| || ||||| ||||| ||||||||||||
Sbjct: 24079 ccacccattagttcaactaggcacttactgatactcaaaccaatgccggtaccaccataa 24020
Query: 1417 ttccttgaagt 1427
|| || |||||
Sbjct: 24019 tttctagaagt 24009
Score = 54.0 bits (27), Expect = 8e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2530 aaattctccacaagtgactccacatcaaagg 2560
||||| |||||||||||||||||||||||||
Sbjct: 22327 aaattttccacaagtgactccacatcaaagg 22297
>gb|BI308772.1|BI308772 EST530182 GPOD Medicago truncatula cDNA clone pGPOD-8N21 5' end, mRNA
sequence
Length = 812
Score = 54.0 bits (27), Expect = 8e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 2125 ccattcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaaca 2184
|||||||| || || |||||||||||||| | || || || |||||||||||||| |||
Sbjct: 398 ccattcattggagtcctgatctcatgtgaaactgtcgcaagaaactgagattttgcgaca 339
Query: 2185 tcagcagcttc 2195
|| ||||||||
Sbjct: 338 tctgcagcttc 328
>gb|CX527617.1|CX527617 s13dNF45E07AT055_515746 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 600
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 580 gttgcctcaaacccgtccatctctggcatctgaacatccat 620
||||| |||||||||||||| |||||||| |||| ||||||
Sbjct: 593 gttgcttcaaacccgtccatttctggcatttgaatatccat 553
>gb|BF641696.1|BF641696 NF058F07IN1F1062 Insect herbivory Medicago truncatula cDNA clone
NF058F07IN 5', mRNA sequence
Length = 643
Score = 48.1 bits (24), Expect = 0.005
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 2128 ttcataggtgttctgatctcatgtgacgcagttgccaggaactgagattttgcaacatca 2187
||||| || ||||||||||| || || |||| || |||||||| ||||| |||||||||
Sbjct: 400 ttcattggagttctgatctcgtgcgaaacagtagcaaggaactgggatttagcaacatca 341
Query: 2188 gcagcttc 2195
|| |||||
Sbjct: 340 gctgcttc 333
>gb|AA660817.1|AA660817 00711 MtRHE Medicago truncatula cDNA 5' similar to sensory
transduction histidine kinase, mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.30
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 2352 atacctgcatctcatttcatgcttcctaaatggatctccaaaatc 2396
|||||| ||| |||||| ||| ||||| ||||||||||||||||
Sbjct: 165 atacctacatatcatttgatgtttcctgtatggatctccaaaatc 121
>gb|AW299129.1|AW299129 EST305803 KV2 Medicago truncatula cDNA clone KV2-12K8, mRNA sequence
Length = 752
Score = 42.1 bits (21), Expect = 0.30
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 2352 atacctgcatctcatttcatgcttcctaaatggatctccaaaatc 2396
|||||| ||| |||||| ||| ||||| ||||||||||||||||
Sbjct: 98 atacctacatatcatttgatgtttcctgtatggatctccaaaatc 54
>gb|AL368436.1|AL368436 MtBA24D12R1 MtBA Medicago truncatula cDNA clone MtBA24D12 T7, mRNA
sequence
Length = 503
Score = 42.1 bits (21), Expect = 0.30
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1909 tttgaagaaaacaaggaaaca 1929
|||||||||||||||||||||
Sbjct: 322 tttgaagaaaacaaggaaaca 302
>gb|BQ255328.1|BQ255328 MTNAB06TKN KVKC Medicago truncatula cDNA clone pKVKC-2A6, mRNA
sequence
Length = 642
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 2728 atgttttctcggtcctcctccccagacatcatgtcaa 2764
||||| ||||| |||||||| ||||||||||| ||||
Sbjct: 572 atgttctctcgatcctcctctccagacatcatatcaa 536
>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete
sequence
Length = 113539
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3286 tcctcctcctctttctcttcctcct 3310
||||||||||||| |||||||||||
Sbjct: 70355 tcctcctcctcttcctcttcctcct 70379
>gb|AC122167.8| Medicago truncatula clone mth1-10d10, complete sequence
Length = 93126
Score = 42.1 bits (21), Expect = 0.30
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3286 tcctcctcctctttctcttcctcct 3310
||||||||||||| |||||||||||
Sbjct: 37068 tcctcctcctcttcctcttcctcct 37092
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 795,311
Number of Sequences: 392609
Number of extensions: 795311
Number of successful extensions: 58387
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58284
Number of HSP's gapped (non-prelim): 103
length of query: 3330
length of database: 441,732,993
effective HSP length: 21
effective length of query: 3309
effective length of database: 433,488,204
effective search space: 1434412467036
effective search space used: 1434412467036
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)