BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW687624.2|AW687624 NF011F05RT1F1046 Developing root Med... 60 4e-007
gb|AJ497137.1|AJ497137 AJ497137 MTFLOW Medicago truncatula ... 60 4e-007
gb|CA917721.1|CA917721 EST641868 GPOD Medicago truncatula c... 60 4e-007
gb|CX521899.1|CX521899 s13dNF1FE12VI099_469602 Virus-Infect... 60 4e-007
gb|CX523689.1|CX523689 s13dNF02G07AT054_322762 Aphid-Infect... 60 4e-007
gb|CX539846.1|CX539846 s13dNF0HH01GS012_462964 Germinating ... 60 4e-007
gb|DW017475.1|DW017475 EST1226436 MTY Medicago truncatula c... 52 1e-004
gb|BI310113.1|BI310113 EST5311863 GESD Medicago truncatula ... 48 0.002
>gb|AW687624.2|AW687624 NF011F05RT1F1046 Developing root Medicago truncatula cDNA clone
NF011F05RT 5', mRNA sequence
Length = 476
Score = 60.0 bits (30), Expect = 4e-007
Identities = 147/186 (79%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| |||||||||||||||||| ||||| ||||| |||| || |||||| ||||||
Sbjct: 182 cttgtttatcctctatatgcttcagttagggcaattgagagcaagtctcctgtggatgat 241
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
|| |||||||| || || ||||| |||| ||||| |||||| | || || || ||||||
Sbjct: 242 caacagtggctaacctattgggttctgtattcattgatcactcttttcgaacttactttt 301
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
|| |||| | || ||| |||| | ||| |||||||||||||| | | | |||||||
Sbjct: 302 gccaaaattcttgaatggattcctatatggccatatgcaaagctgattctaacctgctgg 361
Query: 353 ttggtc 358
||||||
Sbjct: 362 ttggtc 367
>gb|AJ497137.1|AJ497137 AJ497137 MTFLOW Medicago truncatula cDNA clone mt--abc955105a12,
mRNA sequence
Length = 377
Score = 60.0 bits (30), Expect = 4e-007
Identities = 147/186 (79%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| |||||||||||||||||| ||||| ||||| |||| || |||||| ||||||
Sbjct: 164 cttgtttatcctctatatgcttcagttagggcaattgagagcaagtctcctgtggatgat 223
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
|| |||||||| || || ||||| |||| ||||| |||||| | || || || ||||||
Sbjct: 224 caacagtggctaacctattgggttctgtattcattgatcactcttttcgaacttactttt 283
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
|| |||| | || ||| |||| | ||| |||||||||||||| | | | |||||||
Sbjct: 284 gccaaaattcttgaatggattcctatatggccatatgcaaagctgattctaacctgctgg 343
Query: 353 ttggtc 358
||||||
Sbjct: 344 ttggtc 349
>gb|CA917721.1|CA917721 EST641868 GPOD Medicago truncatula cDNA clone GPOD-37E21, mRNA
sequence
Length = 701
Score = 60.0 bits (30), Expect = 4e-007
Identities = 147/186 (79%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| |||||||||||||||||| ||||| ||||| |||| || |||||| ||||||
Sbjct: 158 cttgtttatcctctatatgcttcagttagggcaattgagagcaagtctcctgtggatgat 217
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
|| |||||||| || || ||||| |||| ||||| |||||| | || || || ||||||
Sbjct: 218 caacagtggctaacctattgggttctgtattcattgatcactcttttcgaacttactttt 277
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
|| |||| | || ||| |||| | ||| |||||||||||||| | | | |||||||
Sbjct: 278 gccaaaattcttgaatggattcctatatggccatatgcaaagctgattctaacctgctgg 337
Query: 353 ttggtc 358
||||||
Sbjct: 338 ttggtc 343
>gb|CX521899.1|CX521899 s13dNF1FE12VI099_469602 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 614
Score = 60.0 bits (30), Expect = 4e-007
Identities = 147/186 (79%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| |||||||||||||||||| ||||| ||||| |||| || |||||| ||||||
Sbjct: 191 cttgtttatcctctatatgcttcagttagggcaattgagagcaagtctcctgtggatgat 250
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
|| |||||||| || || ||||| |||| ||||| |||||| | || || || ||||||
Sbjct: 251 caacagtggctaacctattgggttctgtattcattgatcactcttttcgaacttactttt 310
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
|| |||| | || ||| |||| | ||| |||||||||||||| | | | |||||||
Sbjct: 311 gccaaaattcttgaatggattcctatatggccatatgcaaagctgattctaacctgctgg 370
Query: 353 ttggtc 358
||||||
Sbjct: 371 ttggtc 376
>gb|CX523689.1|CX523689 s13dNF02G07AT054_322762 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 692
Score = 60.0 bits (30), Expect = 4e-007
Identities = 147/186 (79%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| |||||||||||||||||| ||||| ||||| |||| || |||||| ||||||
Sbjct: 266 cttgtttatcctctatatgcttcagttagggcaattgagagcaagtctcctgtggatgat 325
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
|| |||||||| || || ||||| |||| ||||| |||||| | || || || ||||||
Sbjct: 326 caacagtggctaacctattgggttctgtattcattgatcactcttttcgaacttactttt 385
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
|| |||| | || ||| |||| | ||| |||||||||||||| | | | |||||||
Sbjct: 386 gccaaaattcttgaatggattcctatatggccatatgcaaagctgattctaacctgctgg 445
Query: 353 ttggtc 358
||||||
Sbjct: 446 ttggtc 451
>gb|CX539846.1|CX539846 s13dNF0HH01GS012_462964 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 392
Score = 60.0 bits (30), Expect = 4e-007
Identities = 147/186 (79%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| |||||||||||||||||| ||||| ||||| |||| || |||||| ||||||
Sbjct: 162 cttgtttatcctctatatgcttcagttagggcaattgagagcaagtctcctgtggatgat 221
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
|| |||||||| || || ||||| |||| ||||| |||||| | || || || ||||||
Sbjct: 222 caacagtggctaacctattgggttctgtattcattgatcactcttttcgaacttactttt 281
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
|| |||| | || ||| |||| | ||| |||||||||||||| | | | |||||||
Sbjct: 282 gccaaaattcttgaatggattcctatatggccatatgcaaagctgattctaacctgctgg 341
Query: 353 ttggtc 358
||||||
Sbjct: 342 ttggtc 347
>gb|DW017475.1|DW017475 EST1226436 MTY Medicago truncatula cDNA clone MTYAU11, mRNA
sequence
Length = 795
Score = 52.0 bits (26), Expect = 1e-004
Identities = 146/186 (78%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcctgtagatgat 232
|||| |||||||||||||||||| ||||| ||| | |||| || |||||| ||||||
Sbjct: 202 cttgtttatcctctatatgcttcagttagggcagttgagagcaagtctcctgtggatgat 261
Query: 233 cagcagtggctcacttactgggtgttgtactcatttatcactttgtttgagctaactttt 292
|| |||||||| || || ||||| |||| ||||| |||||| | || || || ||||||
Sbjct: 262 caacagtggctaacctattgggttctgtattcattgatcactcttttcgaacttactttt 321
Query: 293 gctccaattatcgagtggcttccattttggtcatatgcaaagctgttctttaactgctgg 352
|| |||| | || ||| |||| | ||| |||||||||||||| | | | |||||||
Sbjct: 322 gccaaaattcttgaatggattcctatatggccatatgcaaagctgattctaacctgctgg 381
Query: 353 ttggtc 358
||||||
Sbjct: 382 ttggtc 387
>gb|BI310113.1|BI310113 EST5311863 GESD Medicago truncatula cDNA clone pGESD7K13 5' end,
mRNA sequence
Length = 528
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 173 cttgcttatcctctatatgcttctgttagagcaatagaga 212
|||| |||||||||||||||||| ||||| ||||| ||||
Sbjct: 60 cttgtttatcctctatatgcttcagttagggcaattgaga 99
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 261,191
Number of Sequences: 392609
Number of extensions: 261191
Number of successful extensions: 18788
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18759
Number of HSP's gapped (non-prelim): 21
length of query: 1044
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1024
effective length of database: 433,880,813
effective search space: 444293952512
effective search space used: 444293952512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)