BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943819.2.1
(1121 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ148404.1|BQ148404 NF068A05FL1F1037 Developing flower M... 52 1e-004
gb|AC149209.1| Medicago truncatula chromosome 2 clone mth2-... 46 0.006
gb|AC150559.26| Medicago truncatula clone mth2-67j8, WORKIN... 46 0.006
emb|CR970161.1| mth4-3L24FM1 BAC end, cultivar Jemalong A17... 42 0.100
gb|BF643814.1|BF643814 NF058A04EC1F1033 Elicited cell cultu... 42 0.100
gb|AC148755.6| Medicago truncatula clone mth2-24n16, comple... 42 0.100
gb|AC174300.4| Medicago truncatula clone mth2-84c16, comple... 42 0.100
gb|AC171168.2| Medicago truncatula chromosome 2 clone mth2-... 42 0.100
gb|AW980712.1|AW980712 EST391865 GVN Medicago truncatula cD... 40 0.39
gb|BE998100.1|BE998100 EST429823 GVSN Medicago truncatula c... 40 0.39
gb|BF634949.1|BF634949 NF078E11DT1F1086 Drought Medicago tr... 40 0.39
gb|AW692332.2|AW692332 NF050B06ST1F1000 Developing stem Med... 40 0.39
gb|BQ141476.1|BQ141476 NF020A07PH1F1053 Phoma-infected Medi... 40 0.39
gb|CX517237.1|CX517237 s13dNF06D09VI078_399493 Virus-Infect... 40 0.39
gb|CX528193.1|CX528193 s13dNF52G06AT052_516898 Aphid-Infect... 40 0.39
gb|AC135231.23| Medicago truncatula clone mth2-28m10, compl... 40 0.39
gb|AC144760.27| Medicago truncatula clone mth2-8p15, comple... 40 0.39
gb|AC174364.2| Medicago truncatula clone mth2-43g7, WORKING... 40 0.39
>gb|BQ148404.1|BQ148404 NF068A05FL1F1037 Developing flower Medicago truncatula cDNA clone
NF068A05FL 5', mRNA sequence
Length = 523
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 930 aggtcgggccggaggtagttgatccaccgcagccggcagctcttgccgca 979
|||||||| || ||||||||||||||||| || ||||| ||||| |||||
Sbjct: 118 aggtcggggcgtaggtagttgatccaccggagacggcaactcttaccgca 167
>gb|AC149209.1| Medicago truncatula chromosome 2 clone mth2-31i22, *** SEQUENCING IN
PROGRESS ***, 3 unordered pieces
Length = 137668
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 662 ttctgctgctgctgcggcggcgg 684
|||||||||||||||||||||||
Sbjct: 32378 ttctgctgctgctgcggcggcgg 32356
>gb|AC150559.26| Medicago truncatula clone mth2-67j8, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 107422
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 662 ttctgctgctgctgcggcggcgg 684
|||||||||||||||||||||||
Sbjct: 4964 ttctgctgctgctgcggcggcgg 4986
>emb|CR970161.1| mth4-3L24FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 486
Score = 42.1 bits (21), Expect = 0.100
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 795 gtgttccagtagttcttgatctcgttgtc 823
|||||||| |||||||||||||| |||||
Sbjct: 440 gtgttccaatagttcttgatctcattgtc 468
>gb|BF643814.1|BF643814 NF058A04EC1F1033 Elicited cell culture Medicago truncatula cDNA
clone NF058A04EC 5', mRNA sequence
Length = 545
Score = 42.1 bits (21), Expect = 0.100
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 795 gtgttccagtagttcttgatctcgttgtc 823
|||||||| |||||||||||||| |||||
Sbjct: 317 gtgttccaatagttcttgatctcattgtc 289
>gb|AC148755.6| Medicago truncatula clone mth2-24n16, complete sequence
Length = 119876
Score = 42.1 bits (21), Expect = 0.100
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 795 gtgttccagtagttcttgatctcgttgtc 823
|||||||| |||||||||||||| |||||
Sbjct: 45750 gtgttccaatagttcttgatctcattgtc 45778
>gb|AC174300.4| Medicago truncatula clone mth2-84c16, complete sequence
Length = 139426
Score = 42.1 bits (21), Expect = 0.100
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 795 gtgttccagtagttcttgatctcgttgtc 823
|||||||| |||||||||||||| |||||
Sbjct: 114980 gtgttccaatagttcttgatctcattgtc 115008
>gb|AC171168.2| Medicago truncatula chromosome 2 clone mth2-90o6, *** SEQUENCING IN
PROGRESS ***, 5 unordered pieces
Length = 140452
Score = 42.1 bits (21), Expect = 0.100
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 791 gtgcgtgttccagtagttctt 811
|||||||||||||||||||||
Sbjct: 11727 gtgcgtgttccagtagttctt 11707
>gb|AW980712.1|AW980712 EST391865 GVN Medicago truncatula cDNA clone pGVN-58B9, mRNA
sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 83 gttgctgctgctgcagctgc 102
>gb|BE998100.1|BE998100 EST429823 GVSN Medicago truncatula cDNA clone pGVSN-8D16, mRNA
sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 98 gttgctgctgctgcagctgc 117
>gb|BF634949.1|BF634949 NF078E11DT1F1086 Drought Medicago truncatula cDNA clone NF078E11DT
5', mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 143 gttgctgctgctgcagctgc 162
>gb|AW692332.2|AW692332 NF050B06ST1F1000 Developing stem Medicago truncatula cDNA clone
NF050B06ST 5', mRNA sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 237 gttgctgctgctgcagctgc 256
>gb|BQ141476.1|BQ141476 NF020A07PH1F1053 Phoma-infected Medicago truncatula cDNA clone
NF020A07PH 5', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 654 gcctcggcttctgctgctgc 673
||||||||||||||||||||
Sbjct: 473 gcctcggcttctgctgctgc 454
>gb|CX517237.1|CX517237 s13dNF06D09VI078_399493 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 654 gcctcggcttctgctgctgc 673
||||||||||||||||||||
Sbjct: 490 gcctcggcttctgctgctgc 471
>gb|CX528193.1|CX528193 s13dNF52G06AT052_516898 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 654 gcctcggcttctgctgctgc 673
||||||||||||||||||||
Sbjct: 459 gcctcggcttctgctgctgc 440
>gb|AC135231.23| Medicago truncatula clone mth2-28m10, complete sequence
Length = 106771
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 654 gcctcggcttctgctgctgc 673
||||||||||||||||||||
Sbjct: 61401 gcctcggcttctgctgctgc 61420
>gb|AC144760.27| Medicago truncatula clone mth2-8p15, complete sequence
Length = 108569
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 85047 gttgctgctgctgcagctgc 85066
>gb|AC174364.2| Medicago truncatula clone mth2-43g7, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 85731
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 gttgctgctgctgcagctgc 441
||||||||||||||||||||
Sbjct: 21173 gttgctgctgctgcagctgc 21192
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,634
Number of Sequences: 392609
Number of extensions: 154634
Number of successful extensions: 13127
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13089
Number of HSP's gapped (non-prelim): 38
length of query: 1121
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1101
effective length of database: 433,880,813
effective search space: 477702775113
effective search space used: 477702775113
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)