BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2922138.2.1
(1095 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE124134.1|BE124134 EST394259 DSIL Medicago truncatula c... 40 0.38
gb|AL385363.1|AL385363 MtBC28B05F1 MtBC Medicago truncatula... 40 0.38
gb|BE998769.1|BE998769 EST430556 GVSN Medicago truncatula c... 40 0.38
gb|BF518414.1|BF518414 EST455861 DSIL Medicago truncatula c... 40 0.38
gb|BF633137.1|BF633137 NF052B04DT1F1041 Drought Medicago tr... 40 0.38
gb|BF641482.1|BF641482 NF065E12IN1F1098 Insect herbivory Me... 40 0.38
gb|CA920308.1|CA920308 EST638026 MTUS Medicago truncatula c... 40 0.38
gb|CF069989.1|CF069989 EST670710 MTUS Medicago truncatula c... 40 0.38
gb|DW015914.1|DW015914 EST1224875 MTY Medicago truncatula c... 40 0.38
gb|DW016465.1|DW016465 EST1225426 MTY Medicago truncatula c... 40 0.38
>gb|BE124134.1|BE124134 EST394259 DSIL Medicago truncatula cDNA clone pDSIL-13M7, mRNA
sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 277 atccaagctgctgtgctgttgcatccatcatttgtt 312
>gb|AL385363.1|AL385363 MtBC28B05F1 MtBC Medicago truncatula cDNA clone MtBC28B05 T3, mRNA
sequence
Length = 401
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 220 atccaagctgctgtgctgttgcatccatcatttgtt 255
>gb|BE998769.1|BE998769 EST430556 GVSN Medicago truncatula cDNA clone pGVSN-13O11, mRNA
sequence
Length = 807
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 585 atccaagctgctgtgctgttgcatccatcatttgtt 620
>gb|BF518414.1|BF518414 EST455861 DSIL Medicago truncatula cDNA clone pDSIL-5A7, mRNA
sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 412 atccaagctgctgtgctgttgcatccatcatttgtt 447
>gb|BF633137.1|BF633137 NF052B04DT1F1041 Drought Medicago truncatula cDNA clone NF052B04DT
5', mRNA sequence
Length = 440
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 116 atccaagctgctgtgctgttgcatccatcatttgtt 151
>gb|BF641482.1|BF641482 NF065E12IN1F1098 Insect herbivory Medicago truncatula cDNA clone
NF065E12IN 5', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 484 atccaagctgctgtgctgttgcatccatcatttgtt 519
>gb|CA920308.1|CA920308 EST638026 MTUS Medicago truncatula cDNA clone MTUS-26F5, mRNA
sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 661 atccaagctgctgtgctgttgcatccatcatttgtt 626
>gb|CF069989.1|CF069989 EST670710 MTUS Medicago truncatula cDNA clone MTUS-26F5, mRNA
sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 566 atccaagctgctgtgctgttgcatccatcatttgtt 601
>gb|DW015914.1|DW015914 EST1224875 MTY Medicago truncatula cDNA clone MTYAB16, mRNA
sequence
Length = 883
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 457 atccaagctgctgtgctgttgcatccatcatttgtt 492
>gb|DW016465.1|DW016465 EST1225426 MTY Medicago truncatula cDNA clone MTYAH54, mRNA
sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.38
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 558 atccaggctgctgtgctgttgcacccttcttttgtt 593
||||| ||||||||||||||||| || || ||||||
Sbjct: 485 atccaagctgctgtgctgttgcatccatcatttgtt 520
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 215,691
Number of Sequences: 392609
Number of extensions: 215691
Number of successful extensions: 15448
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15428
Number of HSP's gapped (non-prelim): 20
length of query: 1095
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1075
effective length of database: 433,880,813
effective search space: 466421873975
effective search space used: 466421873975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)