BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2922023.2.1
         (1122 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI270294.1|BI270294  NF008H10FL1F1092 Developing flower M...    40   0.39 
gb|BQ149406.1|BQ149406  NF090B07FL1F1061 Developing flower M...    40   0.39 
gb|CX540023.1|CX540023  s13dNF43H10GS080_463318 Germinating ...    40   0.39 
gb|CX540709.1|CX540709  s13dNF55H05GS048_464696 Germinating ...    40   0.39 

>gb|BI270294.1|BI270294 NF008H10FL1F1092 Developing flower Medicago truncatula cDNA clone
           NF008H10FL 5', mRNA sequence
          Length = 654

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
           |||||||| |||||||||||||| || |||||
Sbjct: 467 gcccagcaactaccgcattggccttgatcctt 436



>gb|BQ149406.1|BQ149406 NF090B07FL1F1061 Developing flower Medicago truncatula cDNA clone
           NF090B07FL 5', mRNA sequence
          Length = 635

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
           |||||||| |||||||||||||| || |||||
Sbjct: 410 gcccagcaactaccgcattggccttgatcctt 379



>gb|CX540023.1|CX540023 s13dNF43H10GS080_463318 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 621

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
           |||||||| |||||||||||||| || |||||
Sbjct: 470 gcccagcaactaccgcattggccttgatcctt 439



>gb|CX540709.1|CX540709 s13dNF55H05GS048_464696 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 544

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 853 gcccagcagctaccgcattggccctggtcctt 884
           |||||||| |||||||||||||| || |||||
Sbjct: 473 gcccagcaactaccgcattggccttgatcctt 442



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,980
Number of Sequences: 392609
Number of extensions: 127980
Number of successful extensions: 10000
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9996
Number of HSP's gapped (non-prelim): 4
length of query: 1122
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1102
effective length of database: 433,880,813
effective search space: 478136655926
effective search space used: 478136655926
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)