BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DW017721.1|DW017721 EST1226682 MTY Medicago truncatula c... 44 0.023
gb|AQ917114.1|AQ917114 T233143b Medicago truncatula BAC lib... 40 0.36
gb|AL375126.1|AL375126 MtBB11E03F1 MtBB Medicago truncatula... 40 0.36
gb|DW017703.1|DW017703 EST1226664 MTY Medicago truncatula c... 40 0.36
gb|AC164520.1| Medicago truncatula chromosome 2 clone mth2-... 40 0.36
>gb|DW017721.1|DW017721 EST1226682 MTY Medicago truncatula cDNA clone MTYAX21, mRNA
sequence
Length = 855
Score = 44.1 bits (22), Expect = 0.023
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 767 attacatcaaaagtggagagagatgcaggaggaatgttgaaagacccaat 816
|||||||||||||| ||||| || || || ||||| |||||||| |||||
Sbjct: 365 attacatcaaaagttgagagggaagctggtggaattttgaaagaaccaat 316
>gb|AQ917114.1|AQ917114 T233143b Medicago truncatula BAC library Medicago truncatula
genomic clone 68D13, DNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 523 atattgtggtatttgccaaa 542
||||||||||||||||||||
Sbjct: 79 atattgtggtatttgccaaa 98
>gb|AL375126.1|AL375126 MtBB11E03F1 MtBB Medicago truncatula cDNA clone MtBB11E03 T3, mRNA
sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 77 cacgaggaactagtgctcgagttt 100
|||||||||||||| |||||||||
Sbjct: 26 cacgaggaactagtcctcgagttt 49
>gb|DW017703.1|DW017703 EST1226664 MTY Medicago truncatula cDNA clone MTYAW93, mRNA
sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 567 tctcatgaatgagaccttca 586
||||||||||||||||||||
Sbjct: 627 tctcatgaatgagaccttca 608
>gb|AC164520.1| Medicago truncatula chromosome 2 clone mth2-13m22, *** SEQUENCING IN
PROGRESS ***, 6 unordered pieces
Length = 84860
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 523 atattgtggtatttgccaaa 542
||||||||||||||||||||
Sbjct: 75798 atattgtggtatttgccaaa 75779
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 523 atattgtggtatttgccaaa 542
||||||||||||||||||||
Sbjct: 57956 atattgtggtatttgccaaa 57937
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 202,618
Number of Sequences: 392609
Number of extensions: 202618
Number of successful extensions: 13427
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13413
Number of HSP's gapped (non-prelim): 14
length of query: 1036
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1016
effective length of database: 433,880,813
effective search space: 440822906008
effective search space used: 440822906008
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)