BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2750951.2.1
         (1014 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CG951090.1|CG951090  MBEKF50TRB mth2 Medicago truncatula ...    40   0.36 
emb|CR970454.1|  mth4-3M14FM1 BAC end, cultivar Jemalong A17...    40   0.36 
gb|BE124763.1|BE124763  EST393798 GVN Medicago truncatula cD...    40   0.36 
gb|BG647093.1|BG647093  EST508712 HOGA Medicago truncatula c...    40   0.36 
gb|BQ145053.1|BQ145053  NF013F02DT1F1027 Drought Medicago tr...    40   0.36 
gb|BQ146735.1|BQ146735  NF051A03FL1F1021 Developing flower M...    40   0.36 
gb|CX539673.1|CX539673  s13dNF66G11GS084_462616 Germinating ...    40   0.36 
gb|CX541575.1|CX541575  s13dNF87G03GS024_466452 Germinating ...    40   0.36 

>gb|CG951090.1|CG951090 MBEKF50TRB mth2 Medicago truncatula genomic clone 73I4, DNA
           sequence
          Length = 951

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 501 aagagaaaattatgagcaactatgtaaggttc 532
           |||||||  ||||||||||| |||||||||||
Sbjct: 172 aagagaatgttatgagcaacaatgtaaggttc 141



>emb|CR970454.1| mth4-3M14FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 344

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 285 tgaggtacagggagaagaagaaga 308
           |||||||||||||||||| |||||
Sbjct: 182 tgaggtacagggagaagaggaaga 205



>gb|BE124763.1|BE124763 EST393798 GVN Medicago truncatula cDNA clone pGVN-67H7, mRNA
           sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 285 tgaggtacagggagaagaagaaga 308
           |||||||||||||||||| |||||
Sbjct: 455 tgaggtacagggagaagaggaaga 478



>gb|BG647093.1|BG647093 EST508712 HOGA Medicago truncatula cDNA clone pHOGA-15N7 5' end,
           mRNA sequence
          Length = 532

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 285 tgaggtacagggagaagaagaaga 308
           |||||||||||||||||| |||||
Sbjct: 212 tgaggtacagggagaagaggaaga 235



>gb|BQ145053.1|BQ145053 NF013F02DT1F1027 Drought Medicago truncatula cDNA clone NF013F02DT
           5', mRNA sequence
          Length = 784

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 285 tgaggtacagggagaagaagaaga 308
           |||||||||||||||||| |||||
Sbjct: 250 tgaggtacagggagaagaggaaga 273



>gb|BQ146735.1|BQ146735 NF051A03FL1F1021 Developing flower Medicago truncatula cDNA clone
           NF051A03FL 5', mRNA sequence
          Length = 776

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 285 tgaggtacagggagaagaagaaga 308
           |||||||||||||||||| |||||
Sbjct: 121 tgaggtacagggagaagaggaaga 144



>gb|CX539673.1|CX539673 s13dNF66G11GS084_462616 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 560

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 285 tgaggtacagggagaagaagaaga 308
           |||||||||||||||||| |||||
Sbjct: 318 tgaggtacagggagaagaggaaga 341



>gb|CX541575.1|CX541575 s13dNF87G03GS024_466452 Germinating Seed Medicago truncatula cDNA,
           mRNA sequence
          Length = 369

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 285 tgaggtacagggagaagaagaaga 308
           |||||||||||||||||| |||||
Sbjct: 56  tgaggtacagggagaagaggaaga 79



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 193,916
Number of Sequences: 392609
Number of extensions: 193916
Number of successful extensions: 13597
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13589
Number of HSP's gapped (non-prelim): 8
length of query: 1014
length of database: 441,732,993
effective HSP length: 20
effective length of query: 994
effective length of database: 433,880,813
effective search space: 431277528122
effective search space used: 431277528122
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)