BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX534173.1|CX534173 s13dNF0TC01MJ002_322105 Methyl Jasmo... 176 3e-042
gb|BI308096.1|BI308096 EST529506 GPOD Medicago truncatula c... 155 1e-035
gb|CX526327.1|CX526327 s13dNF34F09AT079_510398 Aphid-Infect... 153 4e-035
gb|AW689134.1|AW689134 NF015G05ST1F1000 Developing stem Med... 143 4e-032
gb|CX527554.1|CX527554 s13dNF43H03AT032_515620 Aphid-Infect... 137 2e-030
gb|AC126794.15| Medicago truncatula clone mth2-24j7, comple... 121 1e-025
gb|CA917532.1|CA917532 EST641679 GPOD Medicago truncatula c... 88 2e-015
gb|BE325938.2|BE325938 NF083A06ST1F1038 Developing stem Med... 70 4e-010
gb|AC152176.5| Medicago truncatula clone mth2-65c4, complet... 70 4e-010
gb|AC174279.5| Medicago truncatula clone mth2-9f10, WORKING... 70 4e-010
emb|CR322267.1| mte1-49H3FM1 BAC end, cultivar Jemalong A17... 64 3e-008
gb|CX540580.1|CX540580 s13dNF0CC09GS070_464436 Germinating ... 58 2e-006
gb|BI271165.1|BI271165 NF051C11FL1F1086 Developing flower M... 54 3e-005
gb|CX526313.1|CX526313 s13dNF34E07AT055_510370 Aphid-Infect... 54 3e-005
gb|AW686083.1|AW686083 NF034C08NR1F1000 Nodulated root Medi... 52 1e-004
gb|AC148097.7| Medicago truncatula clone mth2-15a20, comple... 52 1e-004
gb|AC140551.8| Medicago truncatula clone mth2-80i8, complet... 52 1e-004
gb|CG953314.1|CG953314 MBEJD55TF mth2 Medicago truncatula g... 46 0.006
emb|CR341902.1| mte1-74M16RM1 BAC end, cultivar Jemalong A1... 46 0.006
emb|CR294214.1| mte1-10A9RM1 BAC end, cultivar Jemalong A17... 46 0.006
emb|CR963537.1| mth4-11D22FM1 BAC end, cultivar Jemalong A1... 46 0.006
emb|CR963853.1| mth4-11E22FM1 BAC end, cultivar Jemalong A1... 46 0.006
emb|CR970794.1| mth4-18L2FM1 BAC end, cultivar Jemalong A17... 46 0.006
gb|BG454986.1|BG454986 NF112A02LF1F1005 Developing leaf Med... 46 0.006
gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone m... 46 0.006
gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone m... 46 0.006
gb|BQ140486.1|BQ140486 NF036C01PH1F1006 Phoma-infected Medi... 42 0.10
gb|CG945869.1|CG945869 MBEEL40TFB mth2 Medicago truncatula ... 40 0.40
emb|CR492780.1| mth2-166H10FM1 BAC end, cultivar Jemalong A... 40 0.40
>gb|CX534173.1|CX534173 s13dNF0TC01MJ002_322105 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 580
Score = 176 bits (89), Expect = 3e-042
Identities = 309/380 (81%), Gaps = 3/380 (0%)
Strand = Plus / Plus
Query: 255 tgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttca 314
|||||||||| |||||||||||||| ||| | ||| | || | |||||| ||||| || |
Sbjct: 117 tgcagagtggttggagtgtttttgtcagttctaagaggctggttgctggggatgcattta 176
Query: 315 tctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgccatgaggcagc 374
| ||||| |||||||| | |||||||||||| || || ||||||||||| ||||| ||||
Sbjct: 177 tatttctgagaggtgagaatggggagcttcgagttggtgtcaggcgtgcaatgagacagc 236
Query: 375 aagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgcta 434
| | ||||||||||| || || || || ||||| ||||||||||||||||||||||| |
Sbjct: 237 agggtaatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaa 296
Query: 435 cagcatggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggacaa 494
| || |||||||||||| |||||||||||||| ||||| || ||||| || |||| |
Sbjct: 297 ctgcctggcatgctgttttgactgggaccatgttcactgtttattacaaaccccggacta 356
Query: 495 gtctccagctgagtttgttgttccctgtgatcgctatatggaatcactgaaacgaaatta 554
| |||||| |||||| ||||||| | ||||| || ||||| || || ||| |||||
Sbjct: 357 g--tccagcggagtttattgttccgtatgatcaatacatggagtctctaaaaaataatta 414
Query: 555 ccctatagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggtt 613
| ||||| ||| | || |||||||||||| | |||||||||||||| || ||||||||
Sbjct: 415 tacaataggcatgcggttcaaaatgaggtttgagggtgaagaggctcctgagcaaaggtt 474
Query: 614 cactgggaccattgttggaa 633
|| || |||||||||||||
Sbjct: 475 tacgggtaccattgttggaa 494
>gb|BI308096.1|BI308096 EST529506 GPOD Medicago truncatula cDNA clone pGPOD-2I13 5' end,
mRNA sequence
Length = 844
Score = 155 bits (78), Expect = 1e-035
Identities = 308/381 (80%), Gaps = 4/381 (1%)
Strand = Plus / Plus
Query: 255 tgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttca 314
|||||||||| |||||||||||||| ||| | ||| | || | |||||| ||||| || |
Sbjct: 378 tgcagagtggttggagtgtttttgtcagttctaagaggctggttgctggggatgcattta 437
Query: 315 tctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgccatgaggcagc 374
| ||||| |||||||| | |||||||||||| || || ||||||||||| ||||| ||||
Sbjct: 438 tatttctgagaggtgagaatggggagcttcgagttggtgtcaggcgtgcaatgagacagc 497
Query: 375 aagcaaatgttccatcttcagtaatatcaagccacagcatg-catcttggtgttcttgct 433
| | ||||||||||| || || || || ||||| |||||| |||||||||||||||||
Sbjct: 498 agggtaatgttccatcctcggttatctctagccatagcatgccatcttggtgttcttgca 557
Query: 434 acagcatggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggaca 493
|| || |||||||||||| |||||||||||||| ||||| || ||||| || ||||
Sbjct: 558 actgcctggcatgctgttttgactgggaccatgttcactgtttattacaaaccccggact 617
Query: 494 agtctccagctgagtttgttgttccctgtgatcgctatatggaatcactgaaacgaaatt 553
|| |||||| |||||| ||||||| | ||||| || ||||| || || ||| ||||
Sbjct: 618 ag--tccagcggagtttattgttccgtatgatcaatacatggagtctctaaaaaataatt 675
Query: 554 accctatagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggt 612
| | ||||| ||| | || |||||||||||| | |||||||||||| | || |||||||
Sbjct: 676 atacaataggcatgcggttcaaaatgaggtttgagggtgaagaggcttctgagcaaaggt 735
Query: 613 tcactgggaccattgttggaa 633
| || || |||||||||||||
Sbjct: 736 ttacgggtaccattgttggaa 756
Score = 48.1 bits (24), Expect = 0.002
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 71 ttgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccatgcagat 130
||||| || ||||||||||| ||||||||||| || || || || | || ||||| |||
Sbjct: 194 ttgaccgcatctgataccagtactcatggtggtttttctgtacttagacgacatgctgat 253
Query: 131 gagtgtcttccgccactggatatg 154
|| |||||||| || |||||||||
Sbjct: 254 gaatgtcttcctcctctggatatg 277
>gb|CX526327.1|CX526327 s13dNF34F09AT079_510398 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 630
Score = 153 bits (77), Expect = 4e-035
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 255 tgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttca 314
|||||||||| |||||||||||||| ||| | ||| | || | |||||| ||||| || |
Sbjct: 372 tgcagagtggttggagtgtttttgtcagttctaagaggctggttgctggggatgcattta 431
Query: 315 tctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgccatgaggcagc 374
| ||||| |||||||| | |||||||||||| || || ||||||||||| ||||| ||||
Sbjct: 432 tatttctgagaggtgagaatggggagcttcgagttggtgtcaggcgtgcaatgagacagc 491
Query: 375 aagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgcta 434
| | ||||||||||| || || || || ||||| ||||||||||||||||||||||| |
Sbjct: 492 agggtaatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaa 551
Query: 435 cagcatggcatgctgttaacactgggaccatgtttactgtctactacaa 483
| || |||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 552 ctgcctggcatgctgttttgactgggaccatgttcactgtttattacaa 600
Score = 48.1 bits (24), Expect = 0.002
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 71 ttgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccatgcagat 130
||||| || ||||||||||| ||||||||||| || || || || | || ||||| |||
Sbjct: 188 ttgaccgcatctgataccagtactcatggtggtttttctgtacttagacgacatgctgat 247
Query: 131 gagtgtcttccgccactggatatg 154
|| |||||||| || |||||||||
Sbjct: 248 gaatgtcttcctcctctggatatg 271
>gb|AW689134.1|AW689134 NF015G05ST1F1000 Developing stem Medicago truncatula cDNA clone
NF015G05ST 5', mRNA sequence
Length = 623
Score = 143 bits (72), Expect = 4e-032
Identities = 308/382 (80%), Gaps = 5/382 (1%)
Strand = Plus / Plus
Query: 255 tgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgc-tggagatgccttc 313
|||||||||| |||||||||||||| ||| | ||| | || | ||| ||| ||||| ||
Sbjct: 20 tgcagagtggttggagtgtttttgtcagttctaagaggctggttgcctggggatgcattt 79
Query: 314 atctttctaagaggtgatagtggggagc-ttcgtgtaggagtcaggcgtgccatgaggca 372
|| ||||| |||||||| | |||||||| |||| || || ||||||||||| ||||| ||
Sbjct: 80 atatttctgagaggtgagaatggggagccttcgagttggtgtcaggcgtgcaatgagaca 139
Query: 373 gcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgc 432
||| | ||||||||||| || || || || ||||| |||||||||||||||||||||||
Sbjct: 140 gcagggtaatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgc 199
Query: 433 tacagcatggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggac 492
|| || |||||||||||| |||||||||||||| ||||| || ||||| || ||||
Sbjct: 200 aactgcctggcatgctgttttgactgggaccatgttcactgtttattacaaaccccggac 259
Query: 493 aagtctccagctgagtttgttgttccctgtgatcgctatatggaatcactgaaacgaaat 552
|| |||||| |||||| ||||||| | ||||| || ||||| || || ||| |||
Sbjct: 260 tag--tccagcggagtttattgttccgtatgatcaatacatggagtctctaaaaaataat 317
Query: 553 taccctatagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaagg 611
|| | ||||| ||| | || |||||||||||| | |||||| ||||||| || ||||||
Sbjct: 318 tatacaataggcatgcggttcaaaatgaggtttgagggtgaanaggctcctgagcaaagg 377
Query: 612 ttcactgggaccattgttggaa 633
|| || || |||||||||||||
Sbjct: 378 tttacgggtaccattgttggaa 399
>gb|CX527554.1|CX527554 s13dNF43H03AT032_515620 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 610
Score = 137 bits (69), Expect = 2e-030
Identities = 244/300 (81%), Gaps = 3/300 (1%)
Strand = Plus / Plus
Query: 335 ggggagcttcgtgtaggagtcaggcgtgccatgaggcagcaagcaaatgttccatcttca 394
||||||||||| || || ||||||||||| ||||| ||||| | ||||||||||| ||
Sbjct: 8 ggggagcttcgagttggtgtcaggcgtgcaatgagacagcagggtaatgttccatcctcg 67
Query: 395 gtaatatcaagccacagcatgcatcttggtgttcttgctacagcatggcatgctgttaac 454
|| || || ||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct: 68 gttatctctagccatagcatgcatcttggtgttcttgcaactgcctggcatgctgttttg 127
Query: 455 actgggaccatgtttactgtctactacaagcctaggacaagtctccagctgagtttgttg 514
|||||||||||||| ||||| || ||||| || |||| || |||||| |||||| |||
Sbjct: 128 actgggaccatgttcactgtttattacaaaccccggactag--tccagcggagtttattg 185
Query: 515 ttccctgtgatcgctatatggaatcactgaaacgaaattaccctatagggatgagattta 574
|||| | ||||| || ||||| || || ||| ||||| | ||||| ||| | || |
Sbjct: 186 ttccgtatgatcaatacatggagtctctaaaaaataattatacaataggcatgcggttca 245
Query: 575 aaatgaggttt-aaggtgaagaggctccagaacaaaggttcactgggaccattgttggaa 633
||||||||||| | |||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 246 aaatgaggtttgagggtgaagaggctcctgagcaaaggtttacgggtaccattgttggaa 305
>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
Length = 129513
Score = 121 bits (61), Expect = 1e-025
Identities = 136/161 (84%)
Strand = Plus / Minus
Query: 323 agaggtgatagtggggagcttcgtgtaggagtcaggcgtgccatgaggcagcaagcaaat 382
|||||||| | |||||||||||| || || ||||||||||| ||||| ||||| | |||
Sbjct: 49264 agaggtgagaatggggagcttcgagttggtgtcaggcgtgcaatgagacagcagggtaat 49205
Query: 383 gttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagcatgg 442
|||||||| || || || || ||||| ||||||||||||||||||||||| || || |||
Sbjct: 49204 gttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaactgcctgg 49145
Query: 443 catgctgttaacactgggaccatgtttactgtctactacaa 483
||||||||| |||||||||||||| ||||| || |||||
Sbjct: 49144 catgctgttttgactgggaccatgttcactgtttattacaa 49104
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 255 tgcagagtggctggagtgtttttgt 279
|||||||||| ||||||||||||||
Sbjct: 49417 tgcagagtggttggagtgtttttgt 49393
Score = 40.1 bits (20), Expect = 0.40
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 71 ttgacagcctctgataccagcactcatggtgg 102
||||| || ||||||||||| |||||||||||
Sbjct: 49795 ttgaccgcatctgataccagtactcatggtgg 49764
Score = 40.1 bits (20), Expect = 0.40
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 574 aaaatgaggtttaagg-tgaagaggctccagaacaaaggt 612
|||||||||||| ||| |||||||||||| || |||||||
Sbjct: 48892 aaaatgaggtttgagggtgaagaggctcctgagcaaaggt 48853
>gb|CA917532.1|CA917532 EST641679 GPOD Medicago truncatula cDNA clone GPOD-36O22, mRNA
sequence
Length = 123
Score = 87.7 bits (44), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 380 aatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagca 439
||||||||||| || || || || ||||| ||||||||||||||||||||||| || ||
Sbjct: 4 aatgttccatcctcggttatctctagccatagcatgcatcttggtgttcttgcaactgcc 63
Query: 440 tggcatgctgttaacactgggaccatgtttactgtctactacaa 483
|||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 64 tggcatgctgttttgactgggaccatgttcactgtttattacaa 107
>gb|BE325938.2|BE325938 NF083A06ST1F1038 Developing stem Medicago truncatula cDNA clone
NF083A06ST 5', mRNA sequence
Length = 634
Score = 69.9 bits (35), Expect = 4e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
|||||||||||| | || | |||||||||||||||||||||||||||||| ||||
Sbjct: 521 ttctgcaagacactaactgtctctgataccagcactcatggtggattctctgtgc 575
>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence
Length = 161536
Score = 69.9 bits (35), Expect = 4e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
|||||||||||| | || | |||||||||||||||||||||||||||||| ||||
Sbjct: 7086 ttctgcaagacactaactgtctctgataccagcactcatggtggattctctgtgc 7140
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 173 caagagcttgtagccaaggacctgcatggtgtgga 207
||||||||||| ||||| |||||||||||||||||
Sbjct: 7472 caagagcttgttgccaaagacctgcatggtgtgga 7506
>gb|AC174279.5| Medicago truncatula clone mth2-9f10, WORKING DRAFT SEQUENCE, 12
unordered pieces
Length = 73000
Score = 69.9 bits (35), Expect = 4e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
|||||||||||| | || | |||||||||||||||||||||||||||||| ||||
Sbjct: 19625 ttctgcaagacactaactgtctctgataccagcactcatggtggattctctgtgc 19679
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 173 caagagcttgtagccaaggacctgcatggtgtgga 207
||||||||||| ||||| |||||||||||||||||
Sbjct: 20011 caagagcttgttgccaaagacctgcatggtgtgga 20045
>emb|CR322267.1| mte1-49H3FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 774
Score = 63.9 bits (32), Expect = 3e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 398 atatcaagccacagcatgcatcttggtgttcttgctacagcatggcatgctgttaacact 457
||||||||||| ||||||||||||||||| |||||||| || | |||||||||| |||
Sbjct: 426 atatcaagccaaagcatgcatcttggtgtgcttgctactgcttcccatgctgttatgact 485
Query: 458 gggaccatgttt 469
| |||||||||
Sbjct: 486 cgtaccatgttt 497
>gb|CX540580.1|CX540580 s13dNF0CC09GS070_464436 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 533
Score = 58.0 bits (29), Expect = 2e-006
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 574 aaaatgaggtttaagg-tgaagaggctccagaacaaaggttcactgggaccattgttgga 632
|||||||||||| ||| |||||||||||| || |||||||| || || ||||||||||||
Sbjct: 52 aaaatgaggtttgagggtgaagaggctcctgagcaaaggtttacgggtaccattgttgga 111
Query: 633 a 633
|
Sbjct: 112 a 112
>gb|BI271165.1|BI271165 NF051C11FL1F1086 Developing flower Medicago truncatula cDNA clone
NF051C11FL 5', mRNA sequence
Length = 654
Score = 54.0 bits (27), Expect = 3e-005
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 574 aaaatgaggtttaagg-tgaagaggctccagaacaaaggttcactggg-accattgttgg 631
|||||||||||| ||| |||||||||||| || |||||||| || ||| |||||||||||
Sbjct: 31 aaaatgaggtttgagggtgaagaggctcctgagcaaaggtttacngggtaccattgttgg 90
Query: 632 aa 633
||
Sbjct: 91 aa 92
>gb|CX526313.1|CX526313 s13dNF34E07AT055_510370 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 610
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 587 aggtgaagaggctccagaacaaaggttcactgggaccattgttggaa 633
||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 6 aggtgaagaggctcctgagcaaaggtttacgggtaccattgttggaa 52
>gb|AW686083.1|AW686083 NF034C08NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF034C08NR 5', mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 1e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 588 ggtgaagaggctccagaacaaaggttcactgggaccattgttggaa 633
|||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 12 ggtgaagaggctcctgagcaaaggtttacgggtaccattgttggaa 57
>gb|AC148097.7| Medicago truncatula clone mth2-15a20, complete sequence
Length = 125098
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 386 ccatcttcagtaatatcaagccacagcatgcatcttggtgtt 427
|||||||| || ||||| || |||||||||||||||||||||
Sbjct: 42035 ccatcttctgtcatatctagtcacagcatgcatcttggtgtt 41994
>gb|AC140551.8| Medicago truncatula clone mth2-80i8, complete sequence
Length = 135244
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 386 ccatcttcagtaatatcaagccacagcatgcatcttggtgtt 427
|||||||| || ||||| || |||||||||||||||||||||
Sbjct: 42038 ccatcttctgtcatatctagtcacagcatgcatcttggtgtt 41997
>gb|CG953314.1|CG953314 MBEJD55TF mth2 Medicago truncatula genomic clone 66J14, DNA
sequence
Length = 905
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
||||||||||| | ||||| ||||| || ||||||||||| |||||||| ||||
Sbjct: 580 ttctgcaagactctcacagcttctgacactagcactcatggaggattctcagtgc 526
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 171 cacaagagcttgtagccaaggacctgcatgg 201
|||||||||||||||| ||||| ||||||||
Sbjct: 215 cacaagagcttgtagcgaaggatctgcatgg 185
>emb|CR341902.1| mte1-74M16RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 584
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 171 cacaagagcttgtagccaaggacctgcatgg 201
|||||||||||||||| ||||| ||||||||
Sbjct: 262 cacaagagcttgtagcgaaggatctgcatgg 232
>emb|CR294214.1| mte1-10A9RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
||||||||||| | ||||| ||||| || ||||||||||| |||||||| ||||
Sbjct: 627 ttctgcaagactctcacagcttctgacactagcactcatggaggattctcagtgc 573
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 171 cacaagagcttgtagccaaggacctgcatgg 201
|||||||||||||||| ||||| ||||||||
Sbjct: 262 cacaagagcttgtagcgaaggatctgcatgg 232
>emb|CR963537.1| mth4-11D22FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 821
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
||||||||||| | ||||| ||||| || ||||||||||| |||||||| ||||
Sbjct: 580 ttctgcaagactctcacagcttctgacactagcactcatggaggattctcagtgc 526
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 171 cacaagagcttgtagccaaggacctgcatgg 201
|||||||||||||||| ||||| ||||||||
Sbjct: 215 cacaagagcttgtagcgaaggatctgcatgg 185
>emb|CR963853.1| mth4-11E22FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
||||||||||| | ||||| ||||| || ||||||||||| |||||||| ||||
Sbjct: 580 ttctgcaagactctcacagcttctgacactagcactcatggaggattctcagtgc 526
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 171 cacaagagcttgtagccaaggacctgcatgg 201
|||||||||||||||| ||||| ||||||||
Sbjct: 215 cacaagagcttgtagcgaaggatctgcatgg 185
>emb|CR970794.1| mth4-18L2FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
||||||||||| | ||||| ||||| || ||||||||||| |||||||| ||||
Sbjct: 580 ttctgcaagactctcacagcttctgacactagcactcatggaggattctcagtgc 526
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 171 cacaagagcttgtagccaaggacctgcatgg 201
|||||||||||||||| ||||| ||||||||
Sbjct: 215 cacaagagcttgtagcgaaggatctgcatgg 185
>gb|BG454986.1|BG454986 NF112A02LF1F1005 Developing leaf Medicago truncatula cDNA clone
NF112A02LF 5', mRNA sequence
Length = 559
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
||||||||||| | ||||| ||||| || ||||||||||| |||||||| ||||
Sbjct: 383 ttctgcaagactctcacagcttctgacactagcactcatggaggattctcagtgc 437
>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence
Length = 142579
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 gcctctgataccagcactcatgg 99
|||||||||||||||||||||||
Sbjct: 49493 gcctctgataccagcactcatgg 49515
Score = 44.1 bits (22), Expect = 0.025
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 173 caagagcttgtagccaaggacctgcatggtgtgg 206
||||||||||| || || ||||||||||||||||
Sbjct: 49934 caagagcttgttgcaaaagacctgcatggtgtgg 49967
>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete sequence
Length = 146321
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgc 113
||||||||||| | ||||| ||||| || ||||||||||| |||||||| ||||
Sbjct: 140059 ttctgcaagactctcacagcttctgacactagcactcatggaggattctcagtgc 140005
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 171 cacaagagcttgtagccaaggacctgcatgg 201
|||||||||||||||| ||||| ||||||||
Sbjct: 139694 cacaagagcttgtagcgaaggatctgcatgg 139664
>gb|BQ140486.1|BQ140486 NF036C01PH1F1006 Phoma-infected Medicago truncatula cDNA clone
NF036C01PH 5', mRNA sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.10
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 71 ttgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccatgcagat 130
||||| || ||||||||||| ||||||||||| || || || || || ||||| |||
Sbjct: 487 ttgaccgcatctgataccagtactcatggtggtttttctgtacttanacgacatgctgat 546
Query: 131 gagtgtcttccgccactggatatg 154
|| |||||||| || |||||||||
Sbjct: 547 gaatgtcttcctcctctggatatg 570
>gb|CG945869.1|CG945869 MBEEL40TFB mth2 Medicago truncatula genomic clone 38H8, DNA
sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.40
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 71 ttgacagcctctgataccagcactcatggtgg 102
||||| || ||||||||||| |||||||||||
Sbjct: 500 ttgaccgcatctgataccagtactcatggtgg 531
>emb|CR492780.1| mth2-166H10FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.40
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 71 ttgacagcctctgataccagcactcatggtgg 102
||||| || ||||||||||| |||||||||||
Sbjct: 499 ttgaccgcatctgataccagtactcatggtgg 530
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 237,084
Number of Sequences: 392609
Number of extensions: 237084
Number of successful extensions: 14806
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14715
Number of HSP's gapped (non-prelim): 89
length of query: 1126
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1106
effective length of database: 433,880,813
effective search space: 479872179178
effective search space used: 479872179178
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)