BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750698.2.1
(1126 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF003718.1|BF003718 EST432216 KV1 Medicago truncatula cD... 105 8e-021
gb|AC152185.1| Medicago truncatula chromosome 2 BAC clone m... 82 1e-013
gb|CA920838.1|CA920838 EST638556 MTUS Medicago truncatula c... 48 0.002
emb|CR507620.1| mth4-2J11FM1 BAC end, cultivar Jemalong A17... 46 0.006
>gb|BF003718.1|BF003718 EST432216 KV1 Medicago truncatula cDNA clone pKV1-13B5, mRNA
sequence
Length = 624
Score = 105 bits (53), Expect = 8e-021
Identities = 104/121 (85%)
Strand = Plus / Plus
Query: 320 caatgaaaattatgcaagaagagacatttggacctattataccaatcatgaaattcagtt 379
|||||||| | |||||||||||| ||||||||||||| || || || ||||| || || |
Sbjct: 152 caatgaaattgatgcaagaagaggcatttggacctatcatgccgataatgaagtttagct 211
Query: 380 ctgatgaagaggctatcaaacttgcaaacgactcaaaatatggtcttggctgtgctgttt 439
|||||||||||| |||||| ||||| || |||||||||||||| || ||||||||||||
Sbjct: 212 ctgatgaagaggttatcaagcttgctaatgactcaaaatatgggctcagctgtgctgttt 271
Query: 440 t 440
|
Sbjct: 272 t 272
Score = 89.7 bits (45), Expect = 5e-016
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 482 tacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtgccagtctttgc 541
|||| |||||||| || ||| | ||||||||||| || | ||||||||| |||||| |||
Sbjct: 314 tacattgtggggtcgctgcagttaatgattttgcatcgaattacatgtgtcagtctctgc 373
Query: 542 cattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgcgag 601
|||| || || || ||| |||| ||||| || |||| | ||| || |||||| ||||||
Sbjct: 374 catttgggggcgtaaaacacagtggatttggacgattcggtggtgttgaaggcctgcgag 433
Query: 602 cttgctgccttgtgaagtctgttgtagaagatagattgtggccat 646
| ||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 434 catgctgccttgtaaagtcagtagttgaagatagatggtggccat 478
>gb|AC152185.1| Medicago truncatula chromosome 2 BAC clone mth2-97e5, complete sequence
Length = 132467
Score = 81.8 bits (41), Expect = 1e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
||||||||||||| || || || ||||| || || ||||||||||||| |||||| ||||
Sbjct: 90177 catttggacctatcatgccgataatgaagtttagctctgatgaagaggttatcaagcttg 90118
Query: 404 caaacgactcaaaatatggtcttggctgtgctgtttt 440
| || |||||||||||||| || |||||||||||||
Sbjct: 90117 ctaatgactcaaaatatgggctcagctgtgctgtttt 90081
Score = 63.9 bits (32), Expect = 3e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 531 ccagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctggcgtaga 590
||||||| ||||||| || || || ||| |||| ||||| || |||| | ||| || ||
Sbjct: 89602 ccagtctctgccatttgggggcgtaaaacacagtggatttggacgattcggtggtgttga 89543
Query: 591 aggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggccat 646
|||| ||||||| ||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 89542 aggcctgcgagcatgctgccttgtaaagtcagtagttgaagatagatggtggccat 89487
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 26 gtgggcagaattgcgctggtgctgaaagattttatgt 62
|||||||||| || |||||||||||| ||||||||||
Sbjct: 91457 gtgggcagaactgtgctggtgctgaacgattttatgt 91421
>gb|CA920838.1|CA920838 EST638556 MTUS Medicago truncatula cDNA clone MTUS-32A3, mRNA
sequence
Length = 499
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 599 gagcttgctgccttgtgaagtctgttgtagaagatagattgtggccat 646
|||| ||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 499 gagcatgctgccttgtaaagtcagtagtcgaagatagatggtggccat 452
>emb|CR507620.1| mth4-2J11FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 268
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaa 398
||||||||||||| || || || ||||| || || ||||||||||||| ||||||
Sbjct: 58 catttggacctatcatgccgataatgaagtttagctctgatgaagaggttatcaa 4
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 261,168
Number of Sequences: 392609
Number of extensions: 261168
Number of successful extensions: 16996
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16978
Number of HSP's gapped (non-prelim): 16
length of query: 1126
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1106
effective length of database: 433,880,813
effective search space: 479872179178
effective search space used: 479872179178
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)