BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647917.2.1
(3189 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA990786.1|CA990786 EST644294 GESD Medicago truncatula c... 50 0.001
gb|CG959253.1|CG959253 MBEIH14TRB mth2 Medicago truncatula ... 48 0.005
emb|CR337016.1| mte1-68E12RM1 BAC end, cultivar Jemalong A1... 44 0.073
emb|CR341044.1| mte1-73O3RM1 BAC end, cultivar Jemalong A17... 44 0.073
gb|CA920779.1|CA920779 EST638497 MTUS Medicago truncatula c... 44 0.073
gb|AC140024.7| Medicago truncatula clone mth2-5f21, WORKING... 42 0.29
>gb|CA990786.1|CA990786 EST644294 GESD Medicago truncatula cDNA clone GESD-29L4, mRNA
sequence
Length = 610
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 929 aggagaacaaccccgaagctgtagacatc 957
||||||||||||||||| |||||||||||
Sbjct: 234 aggagaacaaccccgaaactgtagacatc 206
>gb|CG959253.1|CG959253 MBEIH14TRB mth2 Medicago truncatula genomic clone 61D4, DNA
sequence
Length = 1008
Score = 48.1 bits (24), Expect = 0.005
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 719 tccatggaaggccgatctttacctcgcattctgacacacttaca 762
||||| ||||||| ||||||||||| |||||| ||||| |||||
Sbjct: 655 tccattgaaggcctatctttacctctcattctcacacatttaca 698
>emb|CR337016.1| mte1-68E12RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 941 ccgaagctgtagacatcagattttgtagtcaagt 974
|||||||| ||||||||| ||||||||||||||
Sbjct: 641 ccgaagctatagacatcactttttgtagtcaagt 608
>emb|CR341044.1| mte1-73O3RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.073
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 842 cctgctttgatcagaggtactgcccattcaacaatgtt 879
|||| |||||||| ||| |||||||||||||| |||||
Sbjct: 569 cctgatttgatcaaaggcactgcccattcaactatgtt 532
>gb|CA920779.1|CA920779 EST638497 MTUS Medicago truncatula cDNA clone MTUS-32F7, mRNA
sequence
Length = 772
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 941 ccgaagctgtagacatcagattttgtagtcaagt 974
|||||||| ||||||||| ||||||||||||||
Sbjct: 561 ccgaagctatagacatcactttttgtagtcaagt 594
>gb|AC140024.7| Medicago truncatula clone mth2-5f21, WORKING DRAFT SEQUENCE
Length = 118802
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 944 aagctgtagacatcagattttgtag 968
||||| |||||||||||||||||||
Sbjct: 98688 aagctatagacatcagattttgtag 98664
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 530,624
Number of Sequences: 392609
Number of extensions: 530624
Number of successful extensions: 37176
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37153
Number of HSP's gapped (non-prelim): 23
length of query: 3189
length of database: 441,732,993
effective HSP length: 21
effective length of query: 3168
effective length of database: 433,488,204
effective search space: 1373290630272
effective search space used: 1373290630272
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)