BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG941909.1|CG941909 MBEKP70TR mth2 Medicago truncatula g... 52 5e-005
gb|BE202836.1|BE202836 EST402858 KV1 Medicago truncatula cD... 52 5e-005
gb|AL372911.1|AL372911 MtBA54D11R1 MtBA Medicago truncatula... 52 5e-005
gb|BG453827.1|BG453827 NF095C03LF1F1019 Developing leaf Med... 52 5e-005
gb|BI272105.1|BI272105 NF020G11FL1F1087 Developing flower M... 52 5e-005
gb|BI272382.1|BI272382 NF023C12FL1F1097 Developing flower M... 52 5e-005
gb|CA922543.1|CA922543 EST640261 MTUS Medicago truncatula c... 52 5e-005
gb|AC141866.11| Medicago truncatula clone mth2-12p22, compl... 52 5e-005
gb|AC144723.5| Medicago truncatula clone mth2-7h1, WORKING ... 52 5e-005
gb|CG965748.1|CG965748 MBELO25TR mth2 Medicago truncatula g... 44 0.013
gb|AC152964.9| Medicago truncatula clone mth2-82o6, WORKING... 42 0.051
gb|AC154034.1| Medicago truncatula chromosome 7 BAC clone m... 40 0.20
gb|AC170988.4| Medicago truncatula chromosome 7 clone mth2-... 40 0.20
>gb|CG941909.1|CG941909 MBEKP70TR mth2 Medicago truncatula genomic clone 75L20, DNA
sequence
Length = 967
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 837 cggatcaaggcccaattcacgccttcaaaaaagggatg 874
>gb|BE202836.1|BE202836 EST402858 KV1 Medicago truncatula cDNA clone pKV1-3M24, mRNA
sequence
Length = 540
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 327 cggatcaaggcccaattcacgccttcaaaaaagggatg 364
>gb|AL372911.1|AL372911 MtBA54D11R1 MtBA Medicago truncatula cDNA clone MtBA54D11 T7, mRNA
sequence
Length = 534
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 149 cggatcaaggcccaattcacgccttcaaaaaagggatg 112
>gb|BG453827.1|BG453827 NF095C03LF1F1019 Developing leaf Medicago truncatula cDNA clone
NF095C03LF 5', mRNA sequence
Length = 561
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 256 cggatcaaggcccaattcacgccttcaaaaaagggatg 219
>gb|BI272105.1|BI272105 NF020G11FL1F1087 Developing flower Medicago truncatula cDNA clone
NF020G11FL 5', mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 356 gcccagttcaggccttcaaagaagggatgc 385
|||||||| |||||||||||||||||||||
Sbjct: 492 gcccagttgaggccttcaaagaagggatgc 463
>gb|BI272382.1|BI272382 NF023C12FL1F1097 Developing flower Medicago truncatula cDNA clone
NF023C12FL 5', mRNA sequence
Length = 652
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 477 cggatcaaggcccaattcacgccttcaaaaaagggatg 440
>gb|CA922543.1|CA922543 EST640261 MTUS Medicago truncatula cDNA clone MTUS-55A10, mRNA
sequence
Length = 751
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 288 cggatcaaggcccaattcacgccttcaaaaaagggatg 325
>gb|AC141866.11| Medicago truncatula clone mth2-12p22, complete sequence
Length = 126907
Score = 52.0 bits (26), Expect = 5e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 34372 cggatcaaggcccaattcacgccttcaaaaaagggatg 34409
>gb|AC144723.5| Medicago truncatula clone mth2-7h1, WORKING DRAFT SEQUENCE, 18
unordered pieces
Length = 64100
Score = 52.0 bits (26), Expect = 5e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 356 gcccagttcaggccttcaaagaagggatgc 385
|||||||| |||||||||||||||||||||
Sbjct: 51312 gcccagttgaggccttcaaagaagggatgc 51283
>gb|CG965748.1|CG965748 MBELO25TR mth2 Medicago truncatula genomic clone 81F1, DNA sequence
Length = 944
Score = 44.1 bits (22), Expect = 0.013
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatg 384
|||||||||||||| |||| ||||||||| ||||||||
Sbjct: 837 cggatcaaggcccaattcacgccttcaaa-aagggatg 873
>gb|AC152964.9| Medicago truncatula clone mth2-82o6, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 105277
Score = 42.1 bits (21), Expect = 0.051
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 tgatatttgatatatccttga 182
|||||||||||||||||||||
Sbjct: 43556 tgatatttgatatatccttga 43576
>gb|AC154034.1| Medicago truncatula chromosome 7 BAC clone mth2-71n23, complete sequence
Length = 125195
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 353 aaggcccagttcaggccttcaaagaagggatg 384
||||||||||| ||||| || |||||||||||
Sbjct: 120867 aaggcccagttaaggccctcgaagaagggatg 120836
>gb|AC170988.4| Medicago truncatula chromosome 7 clone mth2-53m12, *** SEQUENCING IN
PROGRESS ***
Length = 122501
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 353 aaggcccagttcaggccttcaaagaagggatg 384
||||||||||| ||||| || |||||||||||
Sbjct: 17162 aaggcccagttaaggccctcgaagaagggatg 17131
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,300
Number of Sequences: 392609
Number of extensions: 122300
Number of successful extensions: 9351
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9330
Number of HSP's gapped (non-prelim): 21
length of query: 578
length of database: 441,732,993
effective HSP length: 19
effective length of query: 559
effective length of database: 434,273,422
effective search space: 242758842898
effective search space used: 242758842898
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)