BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619423.2.1
(886 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW329542.2|AW329542 N200788e rootphos(-) Medicago trunca... 44 0.020
gb|AL367901.1|AL367901 MtBA21A03R1 MtBA Medicago truncatula... 44 0.020
gb|AL382695.1|AL382695 MtBC09D11R1 MtBC Medicago truncatula... 44 0.020
gb|AL385083.1|AL385083 MtBC26C03R1 MtBC Medicago truncatula... 44 0.020
gb|BI271440.1|BI271440 NF051H11FL1F1096 Developing flower M... 44 0.020
gb|BI308216.1|BI308216 EST529626 GPOD Medicago truncatula c... 44 0.020
gb|BQ144988.1|BQ144988 NF110D01DT1F1012 Drought Medicago tr... 44 0.020
>gb|AW329542.2|AW329542 N200788e rootphos(-) Medicago truncatula cDNA clone MHRP-21C8, mRNA
sequence
Length = 587
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 377 cttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggc 436
||||| || ||||||||||| || || ||||| ||||| | |||||||| || |||||
Sbjct: 367 cttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggtggg 426
Query: 437 attgcgtatgaagg 450
||||| ||||||||
Sbjct: 427 attgcttatgaagg 440
>gb|AL367901.1|AL367901 MtBA21A03R1 MtBA Medicago truncatula cDNA clone MtBA21A03 T7, mRNA
sequence
Length = 532
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 377 cttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggc 436
||||| || ||||||||||| || || ||||| ||||| | |||||||| || |||||
Sbjct: 280 cttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggtggg 339
Query: 437 attgcgtatgaagg 450
||||| ||||||||
Sbjct: 340 attgcttatgaagg 353
>gb|AL382695.1|AL382695 MtBC09D11R1 MtBC Medicago truncatula cDNA clone MtBC09D11 T7, mRNA
sequence
Length = 416
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 377 cttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggc 436
||||| || ||||||||||| || || ||||| ||||| | |||||||| || |||||
Sbjct: 28 cttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggtggg 87
Query: 437 attgcgtatgaagg 450
||||| ||||||||
Sbjct: 88 attgcttatgaagg 101
>gb|AL385083.1|AL385083 MtBC26C03R1 MtBC Medicago truncatula cDNA clone MtBC26C03 T7, mRNA
sequence
Length = 404
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 377 cttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggc 436
||||| || ||||||||||| || || ||||| ||||| | |||||||| || |||||
Sbjct: 22 cttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggtggg 81
Query: 437 attgcgtatgaagg 450
||||| ||||||||
Sbjct: 82 attgcttatgaagg 95
>gb|BI271440.1|BI271440 NF051H11FL1F1096 Developing flower Medicago truncatula cDNA clone
NF051H11FL 5', mRNA sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 377 cttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggc 436
||||| || ||||||||||| || || ||||| ||||| | |||||||| || |||||
Sbjct: 361 cttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggtggg 420
Query: 437 attgcgtatgaagg 450
||||| ||||||||
Sbjct: 421 attgcttatgaagg 434
>gb|BI308216.1|BI308216 EST529626 GPOD Medicago truncatula cDNA clone pGPOD-2O18 5' end,
mRNA sequence
Length = 572
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 377 cttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggc 436
||||| || ||||||||||| || || ||||| ||||| | |||||||| || |||||
Sbjct: 371 cttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggtggg 312
Query: 437 attgcgtatgaagg 450
||||| ||||||||
Sbjct: 311 attgcttatgaagg 298
>gb|BQ144988.1|BQ144988 NF110D01DT1F1012 Drought Medicago truncatula cDNA clone NF110D01DT
5', mRNA sequence
Length = 586
Score = 44.1 bits (22), Expect = 0.020
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 377 cttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggc 436
||||| || ||||||||||| || || ||||| ||||| | |||||||| || |||||
Sbjct: 433 cttccgatacatgatgctgattttggttggggaaggcctattttcatgggacctggtggg 374
Query: 437 attgcgtatgaagg 450
||||| ||||||||
Sbjct: 373 attgcttatgaagg 360
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 178,047
Number of Sequences: 392609
Number of extensions: 178047
Number of successful extensions: 11655
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11648
Number of HSP's gapped (non-prelim): 7
length of query: 886
length of database: 441,732,993
effective HSP length: 20
effective length of query: 866
effective length of database: 433,880,813
effective search space: 375740784058
effective search space used: 375740784058
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)