BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2594405.2.1
         (637 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW684432.1|AW684432  NF016H06NR1F1000 Nodulated root Medi...    42   0.056
gb|BF642138.1|BF642138  NF014H06IN1F1059 Insect herbivory Me...    42   0.056
gb|BE325944.2|BE325944  NF083A11ST1F1082 Developing stem Med...    42   0.056
gb|BE325875.2|BE325875  NF083D12ST1F1095 Developing stem Med...    42   0.056
gb|CB892102.1|CB892102  EST649071 KV3 Medicago truncatula cD...    42   0.056
gb|CX528528.1|CX528528  s13dNF55D03AT030_517568 Aphid-Infect...    42   0.056
gb|AC147178.6|  Medicago truncatula clone mth2-142i4, comple...    42   0.056
gb|AL382658.1|AL382658  MtBC09C03R1 MtBC Medicago truncatula...    40   0.22 
gb|CB065510.1|CB065510  EST645191 HOGA Medicago truncatula c...    40   0.22 

>gb|AW684432.1|AW684432 NF016H06NR1F1000 Nodulated root Medicago truncatula cDNA clone
           NF016H06NR 5', mRNA sequence
          Length = 518

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 aacataaacatctcccagaat 409
           |||||||||||||||||||||
Sbjct: 430 aacataaacatctcccagaat 410



>gb|BF642138.1|BF642138 NF014H06IN1F1059 Insect herbivory Medicago truncatula cDNA clone
           NF014H06IN 5', mRNA sequence
          Length = 644

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 aacataaacatctcccagaat 409
           |||||||||||||||||||||
Sbjct: 451 aacataaacatctcccagaat 431



>gb|BE325944.2|BE325944 NF083A11ST1F1082 Developing stem Medicago truncatula cDNA clone
           NF083A11ST 5', mRNA sequence
          Length = 585

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 aacataaacatctcccagaat 409
           |||||||||||||||||||||
Sbjct: 457 aacataaacatctcccagaat 437



>gb|BE325875.2|BE325875 NF083D12ST1F1095 Developing stem Medicago truncatula cDNA clone
           NF083D12ST 5', mRNA sequence
          Length = 553

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 aacataaacatctcccagaat 409
           |||||||||||||||||||||
Sbjct: 457 aacataaacatctcccagaat 437



>gb|CB892102.1|CB892102 EST649071 KV3 Medicago truncatula cDNA clone KV3-53O1, mRNA
           sequence
          Length = 595

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 aacataaacatctcccagaat 409
           |||||||||||||||||||||
Sbjct: 430 aacataaacatctcccagaat 410



>gb|CX528528.1|CX528528 s13dNF55D03AT030_517568 Aphid-Infected Shoots Medicago truncatula
           cDNA, mRNA sequence
          Length = 610

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 aacataaacatctcccagaat 409
           |||||||||||||||||||||
Sbjct: 460 aacataaacatctcccagaat 440



>gb|AC147178.6| Medicago truncatula clone mth2-142i4, complete sequence
          Length = 114693

 Score = 42.1 bits (21), Expect = 0.056
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 389   aacataaacatctcccagaat 409
             |||||||||||||||||||||
Sbjct: 26707 aacataaacatctcccagaat 26727



>gb|AL382658.1|AL382658 MtBC09C03R1 MtBC Medicago truncatula cDNA clone MtBC09C03 T7, mRNA
           sequence
          Length = 491

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 391 cataaacatctcccagaatcccca 414
           |||||||| |||||||||||||||
Sbjct: 72  cataaacaactcccagaatcccca 49



>gb|CB065510.1|CB065510 EST645191 HOGA Medicago truncatula cDNA clone HOGA-19K13, mRNA
           sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 391 cataaacatctcccagaatcccca 414
           |||||||| |||||||||||||||
Sbjct: 396 cataaacaactcccagaatcccca 419



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,895
Number of Sequences: 392609
Number of extensions: 116895
Number of successful extensions: 7210
Number of sequences better than  0.5: 9
Number of HSP's better than  0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7199
Number of HSP's gapped (non-prelim): 11
length of query: 637
length of database: 441,732,993
effective HSP length: 19
effective length of query: 618
effective length of database: 434,273,422
effective search space: 268380974796
effective search space used: 268380974796
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)