BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576887.2.1
(1138 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149207.3| Medicago truncatula chromosome 2 BAC clone m... 42 0.10
gb|AC159124.12| Medicago truncatula clone mth2-172h20, WORK... 42 0.10
>gb|AC149207.3| Medicago truncatula chromosome 2 BAC clone mte1-60l24, complete
sequence
Length = 107210
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 445 cacgagtgggagaaacatggaacctgctc 473
||||||||| ||||||||||||||||||
Sbjct: 22423 cacgagtggaggaaacatggaacctgctc 22395
>gb|AC159124.12| Medicago truncatula clone mth2-172h20, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 117155
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 445 cacgagtgggagaaacatggaacctgctc 473
||||||||| ||||||||||||||||||
Sbjct: 114292 cacgagtggaggaaacatggaacctgctc 114320
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 234,772
Number of Sequences: 392609
Number of extensions: 234772
Number of successful extensions: 17731
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17722
Number of HSP's gapped (non-prelim): 9
length of query: 1138
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1118
effective length of database: 433,880,813
effective search space: 485078748934
effective search space used: 485078748934
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)