BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG580717.1|BG580717 EST482444 GVN Medicago truncatula cD... 86 6e-015
gb|BI310372.1|BI310372 EST5312122 GESD Medicago truncatula ... 86 6e-015
gb|BQ154705.1|BQ154705 NF095F11IR1F1095 Irradiated Medicago... 86 6e-015
gb|BQ155440.1|BQ155440 NF080E10IR1F1083 Irradiated Medicago... 86 6e-015
gb|CX521631.1|CX521631 s13dNF1KD07VI062_469066 Virus-Infect... 86 6e-015
gb|CX532292.1|CX532292 s13dNF67G04MJ024_270880 Methyl Jasmo... 86 6e-015
gb|AL373748.1|AL373748 MtBB02F02F3 MtBB Medicago truncatula... 84 2e-014
gb|AL375056.1|AL375056 MtBB11B01F1 MtBB Medicago truncatula... 84 2e-014
gb|AL376972.1|AL376972 MtBB27F01F1 MtBB Medicago truncatula... 84 2e-014
gb|AL380608.1|AL380608 MtBB53D11F1 MtBB Medicago truncatula... 84 2e-014
gb|BG588564.1|BG588564 EST490373 MHRP- Medicago truncatula ... 84 2e-014
gb|BG588959.1|BG588959 EST490768 MHRP- Medicago truncatula ... 84 2e-014
gb|BQ136077.1|BQ136077 NF033A04EC1F1024 Elicited cell cultu... 84 2e-014
gb|BQ152502.1|BQ152502 NF019D08IR1F1064 Irradiated Medicago... 84 2e-014
gb|CX518595.1|CX518595 s13dNF33H02VI016_424023 Virus-Infect... 84 2e-014
gb|CX519629.1|CX519629 s13dNF43G05VI040_443310 Virus-Infect... 84 2e-014
gb|DW015958.1|DW015958 EST1224919 MTY Medicago truncatula c... 84 2e-014
gb|AL375057.1|AL375057 MtBB11B01R1 MtBB Medicago truncatula... 80 4e-013
gb|BE123925.1|BE123925 EST394050 DSIL Medicago truncatula c... 78 1e-012
gb|BE239738.1|BE239738 EST403787 MHRP- Medicago truncatula ... 78 1e-012
gb|AL373749.1|AL373749 MtBB02F02R2 MtBB Medicago truncatula... 78 1e-012
gb|BQ148131.1|BQ148131 NF062A11FL1F1085 Developing flower M... 72 9e-011
gb|AJ846659.1|AJ846659 AJ846659 MtSN0 Medicago truncatula c... 70 3e-010
gb|BF004811.1|BF004811 EST433309 KV1 Medicago truncatula cD... 66 5e-009
gb|BG580429.1|BG580429 EST482154 GVN Medicago truncatula cD... 62 8e-008
gb|BG582366.1|BG582366 EST484109 GVN Medicago truncatula cD... 60 3e-007
gb|AL376973.1|AL376973 MtBB27F01R1 MtBB Medicago truncatula... 54 2e-005
gb|AL378478.1|AL378478 MtBB38E01R1 MtBB Medicago truncatula... 52 8e-005
gb|AL380609.1|AL380609 MtBB53D11R1 MtBB Medicago truncatula... 52 8e-005
gb|AL385741.1|AL385741 MtBC30D02R1 MtBC Medicago truncatula... 52 8e-005
gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone m... 52 8e-005
gb|BQ149375.1|BQ149375 NF089H01FL1F1015 Developing flower M... 40 0.30
>gb|BG580717.1|BG580717 EST482444 GVN Medicago truncatula cDNA clone pGVN-61I12 5' end,
mRNA sequence
Length = 547
Score = 85.7 bits (43), Expect = 6e-015
Identities = 262/335 (78%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 180 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 239
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 240 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 299
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|| || |||||||| || || || ||||||||||| |||||| | || |||| ||
Sbjct: 300 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaaagaggagatactggggag 359
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || | ||||| |||||||| || || | ||||||||| | ||| | ||||| |||
Sbjct: 360 gttgatgttctcacaaaaggtgataacaactacggggatgacaggctactgtatgctcat 419
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|| ||||||||||| || || ||||||||||| | ||||| || | | | || |||
Sbjct: 420 ggccagctttggctgcaaaggcaccacattatgggtagagctgttgggttcttaccttat 479
Query: 309 gttggctggattacaattatcatgactgagaaacc 343
||||||||| | ||||||||||||||||| |||||
Sbjct: 480 gttggctgggtgacaattatcatgactgaaaaacc 514
>gb|BI310372.1|BI310372 EST5312122 GESD Medicago truncatula cDNA clone pGESD7L8 5' end,
mRNA sequence
Length = 575
Score = 85.7 bits (43), Expect = 6e-015
Identities = 262/335 (78%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 8 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 67
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 68 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 127
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|| || |||||||| || || || ||||||||||| |||||| | || |||| ||
Sbjct: 128 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaaagaggagatactggggag 187
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || | ||||| |||||||| || || | ||||||||| | ||| | ||||| |||
Sbjct: 188 gttgatgttctcacaaaaggtgataacaactacggggatgacaggctactgtatgctcat 247
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|| ||||||||||| || || ||||||||||| | ||||| || | | | || |||
Sbjct: 248 ggccagctttggctgcaaaggcaccacattatgggtagagctgttgggttcttaccttat 307
Query: 309 gttggctggattacaattatcatgactgagaaacc 343
||||||||| | ||||||||||||||||| |||||
Sbjct: 308 gttggctgggtgacaattatcatgactgaaaaacc 342
>gb|BQ154705.1|BQ154705 NF095F11IR1F1095 Irradiated Medicago truncatula cDNA clone
NF095F11IR 5', mRNA sequence
Length = 664
Score = 85.7 bits (43), Expect = 6e-015
Identities = 262/335 (78%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 186 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 245
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 246 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 305
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|| || |||||||| || || || ||||||||||| |||||| | || |||| ||
Sbjct: 306 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaaagaggagatactggggag 365
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || | ||||| |||||||| || || | ||||||||| | ||| | ||||| |||
Sbjct: 366 gttgatgttctcacaaaaggtgataacaactacggggatgacaggctactgtatgctcat 425
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|| ||||||||||| || || ||||||||||| | ||||| || | | | || |||
Sbjct: 426 ggccagctttggctgcaaaggcaccacattatgggtagagctgttgggttcttaccttat 485
Query: 309 gttggctggattacaattatcatgactgagaaacc 343
||||||||| | ||||||||||||||||| |||||
Sbjct: 486 gttggctgggtgacaattatcatgactgaaaaacc 520
>gb|BQ155440.1|BQ155440 NF080E10IR1F1083 Irradiated Medicago truncatula cDNA clone
NF080E10IR 5', mRNA sequence
Length = 681
Score = 85.7 bits (43), Expect = 6e-015
Identities = 262/335 (78%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 255 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 314
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 315 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 374
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|| || |||||||| || || || ||||||||||| |||||| | || |||| ||
Sbjct: 375 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaaagaggagatactggggag 434
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || | ||||| |||||||| || || | ||||||||| | ||| | ||||| |||
Sbjct: 435 gttgatgttctcacaaaaggtgataacaactacggggatgacaggctactgtatgctcat 494
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|| ||||||||||| || || ||||||||||| | ||||| || | | | || |||
Sbjct: 495 ggccagctttggctgcaaaggcaccacattatgggtagagctgttgggttcttaccttat 554
Query: 309 gttggctggattacaattatcatgactgagaaacc 343
||||||||| | ||||||||||||||||| |||||
Sbjct: 555 gttggctgggtgacaattatcatgactgaaaaacc 589
>gb|CX521631.1|CX521631 s13dNF1KD07VI062_469066 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 607
Score = 85.7 bits (43), Expect = 6e-015
Identities = 262/335 (78%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 252 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 311
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 312 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 371
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|| || |||||||| || || || ||||||||||| |||||| | || |||| ||
Sbjct: 372 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaaagaggagatactggggag 431
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || | ||||| |||||||| || || | ||||||||| | ||| | ||||| |||
Sbjct: 432 gttgatgttctcacaaaaggtgataacaactacggggatgacaggctactgtatgctcat 491
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|| ||||||||||| || || ||||||||||| | ||||| || | | | || |||
Sbjct: 492 ggccagctttggctgcaaaggcaccacattatgggtagagctgttgggttcttaccttat 551
Query: 309 gttggctggattacaattatcatgactgagaaacc 343
||||||||| | ||||||||||||||||| |||||
Sbjct: 552 gttggctgggtgacaattatcatgactgaaaaacc 586
>gb|CX532292.1|CX532292 s13dNF67G04MJ024_270880 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 625
Score = 85.7 bits (43), Expect = 6e-015
Identities = 262/335 (78%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 213 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 272
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 273 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 332
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaa 188
|| || |||||||| || || || ||||||||||| |||||| | || |||| ||
Sbjct: 333 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaaagaggagatactggggag 392
Query: 189 gtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatgcacat 248
|| || | ||||| |||||||| || || | ||||||||| | ||| | ||||| |||
Sbjct: 393 gttgatgttctcacaaaaggtgataacaactacggggatgacaggctactgtatgctcat 452
Query: 249 gggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttccatat 308
|| ||||||||||| || || ||||||||||| | ||||| || | | | || |||
Sbjct: 453 ggccagctttggctgcaaaggcaccacattatgggtagagctgttgggttcttaccttat 512
Query: 309 gttggctggattacaattatcatgactgagaaacc 343
||||||||| | ||||||||||||||||| |||||
Sbjct: 513 gttggctgggtgacaattatcatgactgaaaaacc 547
>gb|AL373748.1|AL373748 MtBB02F02F3 MtBB Medicago truncatula cDNA clone MtBB02F02 T3, mRNA
sequence
Length = 481
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 229 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 288
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 289 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 348
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 349 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 390
>gb|AL375056.1|AL375056 MtBB11B01F1 MtBB Medicago truncatula cDNA clone MtBB11B01 T3, mRNA
sequence
Length = 490
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 180 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 239
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 240 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 299
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 300 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 341
>gb|AL376972.1|AL376972 MtBB27F01F1 MtBB Medicago truncatula cDNA clone MtBB27F01 T3, mRNA
sequence
Length = 478
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 229 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 288
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 289 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 348
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 349 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 390
>gb|AL380608.1|AL380608 MtBB53D11F1 MtBB Medicago truncatula cDNA clone MtBB53D11 T3, mRNA
sequence
Length = 461
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 227 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 286
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 287 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 346
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 347 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 388
>gb|BG588564.1|BG588564 EST490373 MHRP- Medicago truncatula cDNA clone pMHRP-53H24, mRNA
sequence
Length = 721
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 180 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 239
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 240 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 299
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 300 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 341
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 478 tatgttggctgggtgacaattatcatgactgaaaaacc 515
>gb|BG588959.1|BG588959 EST490768 MHRP- Medicago truncatula cDNA clone pMHRP-59C6, mRNA
sequence
Length = 710
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 180 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 239
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 240 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 299
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 300 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 341
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 478 tatgttggctgggtgacaattatcatgactgaaaaacc 515
>gb|BQ136077.1|BQ136077 NF033A04EC1F1024 Elicited cell culture Medicago truncatula cDNA
clone NF033A04EC 5', mRNA sequence
Length = 421
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 224 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 283
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 284 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 343
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 344 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 385
>gb|BQ152502.1|BQ152502 NF019D08IR1F1064 Irradiated Medicago truncatula cDNA clone
NF019D08IR 5', mRNA sequence
Length = 633
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 243 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 302
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 303 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 362
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 363 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 404
Score = 46.1 bits (23), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| ||||||||||||||||| |||||
Sbjct: 541 tatgttggctgggngacaattatcatgactgaaaaacc 578
>gb|CX518595.1|CX518595 s13dNF33H02VI016_424023 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 524
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 252 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 311
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 312 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 371
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 372 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 413
>gb|CX519629.1|CX519629 s13dNF43G05VI040_443310 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 592
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 252 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 311
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 312 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 371
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 372 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 413
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 548 tatgttggctgggtgacaattatcatgactgaaaaacc 585
>gb|DW015958.1|DW015958 EST1224919 MTY Medicago truncatula cDNA clone MTYAB63, mRNA
sequence
Length = 819
Score = 83.8 bits (42), Expect = 2e-014
Identities = 132/162 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 278 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 337
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 338 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 397
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaa 170
|| || |||||||| || || || ||||||||||| ||||||
Sbjct: 398 cgagagattccaatcgtgcatcgtgtaattaaggtacatgaa 439
>gb|AL375057.1|AL375057 MtBB11B01R1 MtBB Medicago truncatula cDNA clone MtBB11B01 T7, mRNA
sequence
Length = 551
Score = 79.8 bits (40), Expect = 4e-013
Identities = 250/320 (78%)
Strand = Plus / Plus
Query: 24 tctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagcaaa 83
||||| || ||||||||||| || ||| |||| || ||| ||||||| || ||||| ||
Sbjct: 1 tctggaagtatggaacctggcttcaaacggggggacatcttgtttttacacatgagtaag 60
Query: 84 gatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattccaatt 143
||||| |||||| ||||||| || ||||| || ||||| ||||| || || ||||||||
Sbjct: 61 gatccaattcgcgcaggagagattgttgtatttaatatagatggacgagagattccaatc 120
Query: 144 gtccaccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatcctcacc 203
|| || || ||||||||||| |||||| | || |||| || || || | |||||
Sbjct: 121 gtgcatcgtgtaattaaggtacatgaaagaggagatactggggaggttgatgttctcaca 180
Query: 204 aaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctc 263
|||||||| || || | ||||||||| | ||| | ||||| ||||| |||||||||||
Sbjct: 181 aaaggtgataacaactacggggatgacaggctactgtatgctcatggccagctttggctg 240
Query: 264 cagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctggattaca 323
|| || ||||||||||| | ||||| || | | | || |||||||||||| | |||
Sbjct: 241 caaaggcaccacattatgggtagagctgttgggttcttaccttatgttggctgggtgaca 300
Query: 324 attatcatgactgagaaacc 343
|||||||||||||| |||||
Sbjct: 301 attatcatgactgaaaaacc 320
>gb|BE123925.1|BE123925 EST394050 DSIL Medicago truncatula cDNA clone pDSIL-11N1, mRNA
sequence
Length = 631
Score = 77.8 bits (39), Expect = 1e-012
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || |||| ||||| || |||||
Sbjct: 191 gttgttgttgttctttctggaagtatggaacctggtttccaaagaggtgacattttgttt 250
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||| |||||||| ||||| ||||| |||| || || || ||||||||||| |||||
Sbjct: 251 ttgaccatgagcaaggatccaattcgttcaggggacattgtggttttcaatatagatgga 310
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtca 175
||||| |||||||| || ||||| || |||||||| |||||| ||||
Sbjct: 311 cgtgatattccaatcgttcaccgtgtgattaaggttcatgaaggtca 357
>gb|BE239738.1|BE239738 EST403787 MHRP- Medicago truncatula cDNA clone pMHRP-38K13, mRNA
sequence
Length = 631
Score = 77.8 bits (39), Expect = 1e-012
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || |||| ||||| || |||||
Sbjct: 321 gttgttgttgttctttctggaagtatggaacctggtttccaaagaggtgacattttgttt 380
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||| |||||||| ||||| ||||| |||| || || || ||||||||||| |||||
Sbjct: 381 ttgaccatgagcaaggatccaattcgttcaggggacattgtggttttcaatatagatgga 440
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtca 175
||||| |||||||| || ||||| || |||||||| |||||| ||||
Sbjct: 441 cgtgatattccaatcgttcaccgtgtgattaaggttcatgaaggtca 487
>gb|AL373749.1|AL373749 MtBB02F02R2 MtBB Medicago truncatula cDNA clone MtBB02F02 T7, mRNA
sequence
Length = 550
Score = 77.8 bits (39), Expect = 1e-012
Identities = 243/311 (78%)
Strand = Plus / Plus
Query: 33 atggaacctggatttaaaaggggtgatatcctgtttttgcatatgagcaaagatcctatt 92
||||||||||| || ||| |||| || ||| ||||||| || ||||| || ||||| |||
Sbjct: 6 atggaacctggcttcaaacggggggacatcttgtttttacacatgagtaaggatccaatt 65
Query: 93 cgcacaggagaaatagttgttttcaatatcgatggccgtgaaattccaattgtccaccgc 152
||| ||||||| || ||||| || ||||| ||||| || || |||||||| || || ||
Sbjct: 66 cgcgcaggagagattgttgtatttaatatagatggacgagagattccaatcgtgcatcgt 125
Query: 153 gtaattaaggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaaggtgac 212
||||||||||| |||||| | || |||| || || || | ||||| ||||||||
Sbjct: 126 gtaattaaggtacatgaaagaggagatactggggaggttgatgttctcacaaaaggtgat 185
Query: 213 aataattttggggatgaccgactattatatgcacatgggcagctttggctccagcaacat 272
|| || | ||||||||| | ||| | ||||| ||||| ||||||||||| || ||
Sbjct: 186 aacaactacggggatgacaggctactgtatgctcatggccagctttggctgcaaaggcac 245
Query: 273 cacattatgggacgtgctgtgggctaccttccatatgttggctggattacaattatcatg 332
||||||||||| | ||||| || | | | || |||||||||||| | ||||||||||||
Sbjct: 246 cacattatgggtagagctgttgggttcttaccttatgttggctgggtgacaattatcatg 305
Query: 333 actgagaaacc 343
||||| |||||
Sbjct: 306 actgaaaaacc 316
>gb|BQ148131.1|BQ148131 NF062A11FL1F1085 Developing flower Medicago truncatula cDNA clone
NF062A11FL 5', mRNA sequence
Length = 661
Score = 71.9 bits (36), Expect = 9e-011
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || |||| ||||| || |||||
Sbjct: 246 gttgttgttgttctttctggaagtatggaacctggtttccaaagaggtgacattttgttt 305
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||| |||||||| ||||| ||||| |||| || || || ||||||||||| ||||
Sbjct: 306 ttgaccatgagcaaggatccaattcgttcaggggacattgtggttttcaatatanatgga 365
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtca 175
||||| |||||||| || ||||| || |||||||| |||||| ||||
Sbjct: 366 cgtgatattccaatcgttcaccgtgtgattaaggttcatgaaggtca 412
>gb|AJ846659.1|AJ846659 AJ846659 MtSN0 Medicago truncatula cDNA clone MtN003C05S6, mRNA
sequence
Length = 431
Score = 69.9 bits (35), Expect = 3e-010
Identities = 125/155 (80%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || || |||| || ||| |||||
Sbjct: 277 gttgtcgttgttctttctggaagtatggaacctggcttcgaacggggggacatcttgttt 336
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| |||||
Sbjct: 337 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatgga 396
Query: 129 cgtgaaattccaattgtccaccgcgtaattaaggt 163
|| || |||||||| || || || |||||||||||
Sbjct: 397 cgagagattccaatcgtgcatcgtgtaattaaggt 431
>gb|BF004811.1|BF004811 EST433309 KV1 Medicago truncatula cDNA clone pKV1-18D12, mRNA
sequence
Length = 400
Score = 65.9 bits (33), Expect = 5e-009
Identities = 102/125 (81%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||| ||||| || ||||||||||| || ||| |||| || ||| ||||||| || |||
Sbjct: 270 gttctttctggaagtatggaacctggcttcaaacggggggacatcttgtttttacacatg 329
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| | ||||| |||||| ||||||| || |||||||| ||||| ||||| || || |||
Sbjct: 330 agtgaggatcccattcgcgcaggagagattgttgtttttaatatagatggacgagagatt 389
Query: 138 ccaat 142
|||||
Sbjct: 390 ccaat 394
>gb|BG580429.1|BG580429 EST482154 GVN Medicago truncatula cDNA clone pGVN-57M16 5' end,
mRNA sequence
Length = 277
Score = 61.9 bits (31), Expect = 8e-008
Identities = 115/143 (80%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || |||| ||||| || |||||
Sbjct: 129 gttgttgttgttctttctggaagtatggaacctggtttccaaagaggtgacattttgttt 188
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggc 128
||| |||||||| ||||| ||||| |||| || || || ||||||||||| |||||
Sbjct: 189 ttgaccatgagcaaggatccaattcgttcaggggacattgtggttttcaatatagatgga 248
Query: 129 cgtgaaattccaattgtccaccg 151
||||| |||||||| || |||||
Sbjct: 249 cgtgatattccaatcgttcaccg 271
>gb|BG582366.1|BG582366 EST484109 GVN Medicago truncatula cDNA clone pGVN-69B1 5' end, mRNA
sequence
Length = 711
Score = 60.0 bits (30), Expect = 3e-007
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcctgttt 68
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| |||||
Sbjct: 180 gttgtcgttgttctttctggaagtatggaacctggcttcaaacggggggacatcttgttt 239
Query: 69 ttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatg 126
|| || ||||| || ||||| |||||| ||||||| || ||||| || ||||| ||||
Sbjct: 240 ttacacatgagtaaggatccaattcgcgcaggagagattgttgtatttaatatagatg 297
>gb|AL376973.1|AL376973 MtBB27F01R1 MtBB Medicago truncatula cDNA clone MtBB27F01 T7, mRNA
sequence
Length = 504
Score = 54.0 bits (27), Expect = 2e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 84 gatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattccaatt 143
||||| |||||| ||||||| || ||||| || ||||| ||||| || || ||||||||
Sbjct: 2 gatccaattcgcgcaggagagattgttgtatttaatatagatggacgagagattccaatc 61
Query: 144 gtccaccgcgtaattaaggtccatgaa 170
|| || || ||||||||||| ||||||
Sbjct: 62 gtgcatcgtgtaattaaggtacatgaa 88
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 224 tatgttggctgggtgacaattatcatgactgaaaaacc 261
>gb|AL378478.1|AL378478 MtBB38E01R1 MtBB Medicago truncatula cDNA clone MtBB38E01 T7, mRNA
sequence
Length = 472
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 196 tatgttggctgggtgacaattatcatgactgaaaaacc 233
>gb|AL380609.1|AL380609 MtBB53D11R1 MtBB Medicago truncatula cDNA clone MtBB53D11 T7, mRNA
sequence
Length = 510
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 206 tatgttggctgggtgacaattatcatgactgaaaaacc 243
>gb|AL385741.1|AL385741 MtBC30D02R1 MtBC Medicago truncatula cDNA clone MtBC30D02 T7, mRNA
sequence
Length = 525
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 213 tatgttggctgggtgacaattatcatgactgaaaaacc 250
>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete
sequence
Length = 113539
Score = 52.0 bits (26), Expect = 8e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 306 tatgttggctggattacaattatcatgactgagaaacc 343
|||||||||||| | ||||||||||||||||| |||||
Sbjct: 32297 tatgttggctgggtgacaattatcatgactgaaaaacc 32260
>gb|BQ149375.1|BQ149375 NF089H01FL1F1015 Developing flower Medicago truncatula cDNA clone
NF089H01FL 5', mRNA sequence
Length = 358
Score = 40.1 bits (20), Expect = 0.30
Identities = 78/96 (81%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 9 gttgtagtggttctctctggtagcatggaacctggatttaaa-aggggtgatatcctgtt 67
||||| || ||||| ||||| || ||||||||||| || ||| |||| || ||| ||||
Sbjct: 255 gttgtcgttgttctttctggaagtatggaacctggcttcaaacgggggggacatcttgtt 314
Query: 68 tttgcatatgagcaaagatcctattcgcacaggaga 103
||| || ||||| || ||||| |||||| |||||||
Sbjct: 315 tttacacatgagtaaggatccaattcgcgcaggaga 350
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 230,326
Number of Sequences: 392609
Number of extensions: 230326
Number of successful extensions: 16446
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16374
Number of HSP's gapped (non-prelim): 73
length of query: 870
length of database: 441,732,993
effective HSP length: 20
effective length of query: 850
effective length of database: 433,880,813
effective search space: 368798691050
effective search space used: 368798691050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)